Filters








482 Hits in 5.0 sec

PubChem 2019 update: improved access to chemical data

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A Shoemaker, Paul A Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang (+1 others)
<span title="2018-10-29">2018</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
PubChem also released a major update to PubChem Widgets and introduced a new programmatic access interface, called PUG-View. This paper describes these new developments in PubChem.  ...  PubChem (https://pubchem.ncbi.nlm.nih.gov) is a key chemical information resource for the biomedical research community. Substantial improvements were made in the past few years.  ...  ACKNOWLEDGEMENTS We appreciate the hundreds of data contributors for making their data openly accessible within PubChem.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gky1033">doi:10.1093/nar/gky1033</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30371825">pmid:30371825</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6324075/">pmcid:PMC6324075</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fk2j4nslwjg35grkjicecxorni">fatcat:fk2j4nslwjg35grkjicecxorni</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190309110218/http://pdfs.semanticscholar.org/f843/9507f36a4c9e8bcdce48d9db8a69acf56f14.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f8/43/f8439507f36a4c9e8bcdce48d9db8a69acf56f14.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gky1033"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324075" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Automated evaluation of consistency within the PubChem Compound database

Hesam Dashti, Jonathan R. Wedell, William M. Westler, John L. Markley, Hamid R. Eghbalnia
<span title="2019-02-19">2019</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a577b42d4nfhddl7kurxnuyzem" style="color: black;">Scientific Data</a> </i> &nbsp;
We have applied the ALATIS approach, which is based on the international chemical shift identifier (InChI) model, to the full PubChem Compound database to generate unique and reproducible compound and  ...  This exercise also served to identify entries with discrepancies between structures and chemical formulas or InChI strings.  ...  Acknowledgements We thank the PubChem support team for answering our inquiries and facilitating easy download of the data entries.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/sdata.2019.23">doi:10.1038/sdata.2019.23</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30778259">pmid:30778259</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6380220/">pmcid:PMC6380220</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3gysuhgzsbbwdlq2jp6s3nlb3y">fatcat:3gysuhgzsbbwdlq2jp6s3nlb3y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200315175921/https://www.nature.com/articles/sdata201923.pdf?error=cookies_not_supported&amp;code=db9bf3a1-2b69-4ece-9c2a-9e12378b1cf5" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bb/4d/bb4dd782cde4fdc962722ec7f0bea31f6957e4be.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/sdata.2019.23"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380220" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Norine: update of the nonribosomal peptide resource

<span title="2020-01-08">2019</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
To maintain a high data quality, successive filters are applied to automatically validate the NRP annotations and only validated data is inserted in the database.  ...  Norine, the unique resource dedicated to nonribosomal peptides (NRPs), is now updated with a new pipeline to automate massive sourcing and enhance annotation.  ...  E.R. has developed rBAN, the Kendrick Formula Predictor, and parts of the pipeline in relation to peptide structures and also participates in data correction.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkz1000">doi:10.1093/nar/gkz1000</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31691799">pmid:31691799</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7145658/">pmcid:PMC7145658</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pvjvt6o2k5enreunbcfnmcincm">fatcat:pvjvt6o2k5enreunbcfnmcincm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210429122011/https://hal.archives-ouvertes.fr/hal-02376009/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/87/fa/87fa326adc5bd4e58bc44454107635f436925aa3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkz1000"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145658" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update

<span title="2020-01-08">2019</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
We have also improved the compliance to the FAIR data principles by providing (i) SIGNOR stable identifiers, (ii) programmatic access through REST APIs, (iii) bioschemas and (iv) downloadable data in standard-compliant  ...  The data are freely accessible and downloadable at https://signor.uniroma2.it/.  ...  Following the MI2CAST recommendations, chemicals and small ligands are now linked to the ChEBI database (14) and, whenever the chemical is not annotated in this database, the reference database is PUBCHEM  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkz949">doi:10.1093/nar/gkz949</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31665520">pmid:31665520</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7145695/">pmcid:PMC7145695</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/aujwealclfgtrawtr3dzap4s4u">fatcat:aujwealclfgtrawtr3dzap4s4u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200505120431/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC7145695&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/00/26/0026f635095f960c66f88a9a91acd5f3c2024607.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkz949"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145695" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The human DEPhOsphorylation Database DEPOD: 2019 update

<span title="2019-01-01">2019</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
In addition, we have improved the data access as all the data in DEPOD can now be easily downloaded in a user-friendly format.  ...  We report here an update to DEPOD by integrating and/or linking to annotations from 69 other open access databases including disease associations, phosphorylating kinases, protein interactions, and also  ...  The authors would like to thank the users of DEPOD and colleagues for their feedback (see also the acknowledgments section online).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baz133">doi:10.1093/database/baz133</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31836896">pmid:31836896</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6911163/">pmcid:PMC6911163</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gkmqr3epm5bfvb3zxkn3kp26ee">fatcat:gkmqr3epm5bfvb3zxkn3kp26ee</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200502102034/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6911163&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1e/48/1e485772cfc5461f807aeac607dcfb4689197edb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baz133"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6911163" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The Immune Epitope Database (IEDB): 2018 update

Randi Vita, Swapnil Mahajan, James A Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R Cantrell, Daniel K Wheeler, Alessandro Sette, Bjoern Peters
<span title="2018-10-24">2018</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Having been publicly accessible for >10 years, the recent focus of the IEDB has been improved query and reporting functionality to meet the needs of our users to access and summarize data that continues  ...  Here we present an update on our current efforts and future goals.  ...  ACKNOWLEDGEMENTS We wish to acknowledge the work of the entire IEDB curation and development teams.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gky1006">doi:10.1093/nar/gky1006</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30357391">pmid:30357391</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6324067/">pmcid:PMC6324067</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4xzm3vigy5fwvayltmt3yx2wle">fatcat:4xzm3vigy5fwvayltmt3yx2wle</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190220214212/http://pdfs.semanticscholar.org/288b/317e427c6bf4c94d455049bd1368ff2071eb.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/28/8b/288b317e427c6bf4c94d455049bd1368ff2071eb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gky1006"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324067" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

SANCDB: an update on South African natural compounds and their readily available analogs

Bakary N'tji Diallo, Michael Glenister, Thommas M Musyoka, Kevin Lobb, Özlem Tastan Bishop
<span title="2021-05-05">2021</span> <i title="Springer (Biomed Central Ltd.)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5aubiwi6v5beng6iqzj577kiaa" style="color: black;">Journal of Cheminformatics</a> </i> &nbsp;
With the emergence of newer chemoinformatic technologies, existing chemical databases require constant updates to facilitate information accessibility and integration by users.  ...  To our knowledge, this feature is not available in other NP databases. Additionally, for easier access to information by users, the database and website interface were updated.  ...  These steps have been incorporated into an automated update pipeline in the backend which fetches updated analog data from the respective Mcule and MolPort database APIs monthly.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13321-021-00514-2">doi:10.1186/s13321-021-00514-2</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33952332">pmid:33952332</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bmtq5vkn4narjmtghkh6hot6si">fatcat:bmtq5vkn4narjmtghkh6hot6si</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210716143812/https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00514-2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8d/a3/8da3806548049edb2ed6d704897ce9a0a1936bc3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13321-021-00514-2"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

PubChem in 2021: new data content and improved web interfaces

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A Shoemaker, Paul A Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang (+1 others)
<span title="2020-11-05">2020</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Additionally, in response to the coronavirus disease 2019 (COVID-19) outbreak, PubChem created a special data collection that contains PubChem data related to COVID-19 and the severe acute respiratory  ...  Data from more than 100 new data sources were added to PubChem, including chemical-literature links from Thieme Chemistry, chemical and physical property links from SpringerMaterials, and patent links  ...  ACKNOWLEDGEMENTS We appreciate the hundreds of data contributors for making their data openly accessible within PubChem.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa971">doi:10.1093/nar/gkaa971</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33151290">pmid:33151290</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ntmtvuyyabhvlmpostjrq32tq4">fatcat:ntmtvuyyabhvlmpostjrq32tq4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210119091343/https://watermark.silverchair.com/gkaa971.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAqEwggKdBgkqhkiG9w0BBwagggKOMIICigIBADCCAoMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMCfqJcSce5RyuKomTAgEQgIICVFqphgQIXUdk1c1eo7RSS7KF5ozU_qTGFtkIWMl440Qqz6jOPP3GKZ9uCoAZFUJYAPbQWcVUT_XQCzrekk-hefhzqfu5tpN2C8evCldcTxrNr9yBfWvYlLdTtbmW135H86yUWeYSDR1N8ylpptRtxiiA_2Pn104yh-1mfumQ4fMwDFs345pGXEZ_cnLjxyxU2-bNmdT4SCxf37sfYXSL7LtM39rckmIIU-TPUk0bMH67idsD3t27xqPX50CVgE1ZQiTy2IvaV8FnQi-jQlshZI2UQ7M2Cj9I521ahV4qe0INk2hGNc20Wio1bf7szqiExolTkUEC3ICt-1Av7nx20gNJUPqCFdXrj_35nkB6KCzMn6BN_uQvRlWlXlbOfBJM82ADrPwpB1xP1mCAN3jpgfgo0BO1xk7v377DkpVJjXeabxJ6gPglVFDJHXCzgbObuJZcSMDE_ptl4JZPWOjrCTeOG--kxqFFXeqoAOrQqG3a9CplGgDzCGLk7j2LHhPDO4CUkKxQLRibsOMOhNMNHQDbnNd2YYCuSwoYGiy0Bd868SHoIk3zlTmhKIdPzcZDz2X12irNoHdtbAX4vm_hd1zA_q-hNRCgpqJTJpAj1iZsLblEUXet9Run18uklAIZ5ZfO3D_prwNzwDpgj5UBtiPNXmhN6VUCrWi9SY5onnrqFJM6Kydr74JVnLvKYzOhVl9_G7rMxSomV2nK60eL5ojWaE35VV33rMxIQXQP1W-pxDzmnJH8mvwFNpxjicJ-6aj4N_1pjl6bH0u0K9OJ6cerL6Tf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/02/01/020106d4ed5bc8f327f5691ac692473ba1006eac.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa971"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a>

The Role of Vitamins in Neurodegenerative Disease: An Update

Sachchida Nand Rai, Payal Singh, Harry W.M. Steinbusch, Emanuel Vamanu, Ghulam Ashraf, Mohan Prasad Singh
<span title="2021-09-22">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jgmgd4z6dzhzziggcczoforhve" style="color: black;">Biomedicines</a> </i> &nbsp;
Hormesis is also an essential factor that is very helpful to determine the effective dose of vitamins.  ...  A deficiency in or dysregulation of vitamins adversely affects the neuronal metabolism, which may lead to neurodegenerative diseases.  ...  The authors also would like to acknowledge Biorender (https://app.biorender.com/biorender-templates (accessed on 20 April 2020)) for providing an efficient platform to create all the figures.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/biomedicines9101284">doi:10.3390/biomedicines9101284</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34680401">pmid:34680401</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/37ypplisdbdidpbibxuvv7kfby">fatcat:37ypplisdbdidpbibxuvv7kfby</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210930133955/https://mdpi-res.com/d_attachment/biomedicines/biomedicines-09-01284/article_deploy/biomedicines-09-01284.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9e/4c/9e4cf939c33d1a9272b31e066486cb0173183378.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/biomedicines9101284"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

PubChem Periodic Table and Element pages: improving access to information on chemical elements from authoritative sources

Sunghwan Kim, Asta Gindulyte, Jian Zhang, Paul A. Thiessen, Evan E. Bolton
<span title="2020-07-13">2020</span> <i title="Walter de Gruyter GmbH"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/e3tvwb7firdzllv7m6od4chvoi" style="color: black;">Chemistry Teacher International</a> </i> &nbsp;
Overall, the PubChem Periodic Table and Element pages improve access to chemical element data from authoritative sources.  ...  These services help users navigate the abundant chemical element data available within PubChem, while providing a convenient entry point to explore additional chemical content, such as biological activities  ...  Acknowledgments: We are grateful to Dr. Jason Telford, who organized Spring 2019 ConfChem Newsletter.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1515/cti-2020-0006">doi:10.1515/cti-2020-0006</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34268481">pmid:34268481</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8276875/">pmcid:PMC8276875</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ld4xocptwvdhfkb7ilesybkssy">fatcat:ld4xocptwvdhfkb7ilesybkssy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200714155451/https://www.degruyter.com/downloadpdf/journals/cti/ahead-of-print/article-10.1515-cti-2020-0006/article-10.1515-cti-2020-0006.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/48/05/48059f522a11515570369bfe17e984b0a5dd8856.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1515/cti-2020-0006"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> degruyter.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8276875" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Maintenance, update and further development of EFSA's Chemical Hazards: OpenFoodTox 2.0

Emilio Benfenati, Alessandra Roncaglioni, Edoardo Carnesecchi, Matilda Mazzucotelli, Marco Marzo, Andrey Toropov, Alla Toropova, Rossella Baldin, Andrea Ciacci, Simona Kovarich, Luca Sartori, Chihae Yang (+3 others)
<span title="">2021</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/oq7njvtix5erfllrjekbj6psnq" style="color: black;">EFSA Supporting Publications</a> </i> &nbsp;
The data collection for new data types has been continued with further expansion of the data model to incorporate new data types including physicochemical properties (OHT 1 to 23-5), degradation and bioaccumulation  ...  Case studies on OHT 201 to report mechanistic data are illustrated.  ...  The authors are grateful to JRC colleagues (Clemens Wittwehr and Alicia Paini) for the valuable discussions on OECD Harmonised Templates (OHTs).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2903/sp.efsa.2021.en-6476">doi:10.2903/sp.efsa.2021.en-6476</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6okl3izbozbxzhlfs46se2wgau">fatcat:6okl3izbozbxzhlfs46se2wgau</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210716021656/https://efsa.onlinelibrary.wiley.com/doi/pdfdirect/10.2903/sp.efsa.2021.EN-6476" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/40/7b/407b40510b170783597ee0633b26cdc3a54883e1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2903/sp.efsa.2021.en-6476"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Database resources of the National Center for Biotechnology Information

Eric W Sayers, Jeffrey Beck, Evan E Bolton, Devon Bourexis, James R Brister, Kathi Canese, Donald C Comeau, Kathryn Funk, Sunghwan Kim, William Klimke, Aron Marchler-Bauer, Melissa Landrum (+13 others)
<span title="2020-10-23">2020</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Additional resources that were updated in the past year include PMC, Bookshelf, Genome Data Viewer, SRA, ClinVar, dbSNP, dbVar, Pathogen Detection, BLAST, Primer-BLAST, IgBLAST, iCn3D and PubChem.  ...  All of these resources can be accessed through the NCBI home page at https://www.ncbi.nlm.nih.gov.  ...  ACKNOWLEDGEMENTS The authors would like to thank all of the NCBI staff who through their dedicated efforts continue to allow NCBI to provide our full collection of services to the community. FUNDING  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa892">doi:10.1093/nar/gkaa892</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33095870">pmid:33095870</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pptmq2emtjft7e62jnnm62t6ny">fatcat:pptmq2emtjft7e62jnnm62t6ny</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201026230440/https://watermark.silverchair.com/gkaa892.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAArMwggKvBgkqhkiG9w0BBwagggKgMIICnAIBADCCApUGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM99OeknohPZ2O-plOAgEQgIICZguuRzPNd3JJRWRCGGB9AlOkf8xixCx4Vc--1U-JEl-2zlKU_s5qx5fEdpbvOjskHh2WmiFBCudHng7KsHq2nl5wRMmtcE46Xd2EQ53pJrZ6l9zG-f2Dkks8Wa9PVEf9F1WnQOmvd32NsVFchxW7PfPQvXVzcX87wH1MdY37UDuwjeOcsQ4VaIKwXWiJQ70OvX2T_WkrzfxJ78DoZuLZ-G9NiAFnvk-fiX76_60EU9E5hmfBDvBxIcBc7fUC6MXl0oFa0Wic05ijF-Rg2rSW2GqOlz_grUNF6Jt4QYXJCYwifFfL2ow0LfLVO_nN0tDm-IvNdOJtWteAFSHflB6RW_9t3FYs_D5jZBnBgxVT-Xoq-ZfEqaThnsAWB2qNVE17NRpEYx78GyG1XIyq53-bnjkLtUH5oWAp3b4puaaXmrY5-9gt_bD13FwCfobIs1J-lvgTF_b68WkU_DmSmhd3cMrlVspDT3Q0svn0VidXge2HAuAu2Gyyy0Qs4AX0D9_jeI5N-KsQiwrRseKeXHl05dpHBbl0vt1HbbLvl1fBsbhpBKvMeRI5qbDo0kmWnu9xmU3fFbQ5L3TNLIlFQBrf14TX0Vvwv5ajydPoYia7rK8FEvFLVKZGttBlLsW0VE2XBC32H_PLouSGJ1wUdlDK3A6JEjSt4VtdF-Zpf10vIejxNXEkhTsHh6KmohigG9SeXL03Bm1dy-o4f4ze7UnYLy9nDPutbf6WYyGYAsw7x3QwFqv-PKUvJlgwg9YkPIsH_NlL06FcF5jnLMEvBJEMGgvFqJYiFHI4j25zF8UQL8itDV559AtW" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9a/33/9a33f08089f65add873441dbc14caeb4a8009dcd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa892"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a>

Application of Permeation Enhancers in Oral Delivery of Macromolecules: An Update

Sam Maher, David Brayden, Luca Casettari, Lisbeth Illum
<span title="2019-01-19">2019</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eyicatbz75hkld675oqybzylzu" style="color: black;">Pharmaceutics</a> </i> &nbsp;
The application of permeation enhancers (PEs) to improve transport of poorly absorbed active pharmaceutical ingredients across the intestinal epithelium is a widely tested approach.  ...  of conventional oral formulations that have progressed to clinical testing.  ...  © 2019 by the authors.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/pharmaceutics11010041">doi:10.3390/pharmaceutics11010041</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30669434">pmid:30669434</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6359609/">pmcid:PMC6359609</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vpeeextemrchjgb3h7uxrenxtm">fatcat:vpeeextemrchjgb3h7uxrenxtm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190505080755/https://res.mdpi.com/pharmaceutics/pharmaceutics-11-00041/article_deploy/pharmaceutics-11-00041.pdf?filename=&amp;attachment=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0b/4b/0b4b9ccff7b55541afc346776432dbda34b90ba2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/pharmaceutics11010041"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359609" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag

Emma L. Schymanski, Todor Kondić, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan E. Bolton
<span title="2021-03-08">2021</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5aubiwi6v5beng6iqzj577kiaa" style="color: black;">Journal of Cheminformatics</a> </i> &nbsp;
PubChemLite is a living collection, updating as annotation content in PubChem is updated, and exported to allow direct integration into existing workflows such as MetFrag.  ...  Benchmarking datasets from earlier publications are used to show how experimental knowledge and existing datasets can be used to detect and fill gaps in compound databases to progressively improve large  ...  Regular updates/deposition of relevant third-party data resources in PubChem such as HMDB, CompTox and the Blood Exposome database will help ensure that this content can be included and updated in PubChemLite  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13321-021-00489-0">doi:10.1186/s13321-021-00489-0</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33685519">pmid:33685519</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/tdogsqldbngxtdcmovrrct4hxm">fatcat:tdogsqldbngxtdcmovrrct4hxm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210313074332/https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00489-0.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a6/3f/a63f8b3032be2e2802cf1a8c199fbf165d8e097b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13321-021-00489-0"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

Enhancing the Discovery of Chemistry Theses by Registering Substances and Depositing in PubChem

Vincent F. Scalfani, Barbara J. Dahlbach, Jacob Robertson
<span title="2021-05-07">2021</span> <i title="University of Alberta Libraries"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zb2ivzoufjgurks4atgdfnzfh4" style="color: black;">Issues in Science and Technology Librarianship</a> </i> &nbsp;
Chemical substances from theses are not widely accessible as searchable machine-readable formats.  ...  In total, 73 theses were selected for the project, resulting in about 3,000 substances registered using the IUPAC International Chemical Identifier and deposited in PubChem as either structure-data files  ...  Finally, we thank NIH/NLM/NCBI PubChem staff for their helpful responses related to chemical file formats and data submission questions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.29173/istl2566">doi:10.29173/istl2566</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ful3zqyrmbfidhm5ywjzzad3mu">fatcat:ful3zqyrmbfidhm5ywjzzad3mu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210511050118/https://journals.library.ualberta.ca/istl/index.php/istl/article/download/2566/2607" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/eb/ca/ebcabcff3f1eb165901058cf97d2b9f7e2d68d25.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.29173/istl2566"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>
&laquo; Previous Showing results 1 &mdash; 15 out of 482 results