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ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes

T. D. Otto, M. Catanho, C. Tristao, M. Bezerra, R. M. Fernandes, G. S. Elias, A. C. Scaglia, B. Bovermann, V. Berstis, S. Lifschitz, A. B. de Miranda, W. Degrave
2010 Bioinformatics  
The resulting database, ProteinWorldDB, which contains coordinates of pairwise protein alignments and their respective scores, is now made available.  ...  ProteinWorldDB is integrated with annotations derived from Swiss-Prot, Pfam, KEGG, NCBI Taxonomy database and gene ontology.  ...  Briefly, a set of 3 812 663 proteins from RefSeq version 21-consisting of all predicted proteins encoded in 458 completely sequenced and unfinished genomes-and 254 609 proteins from Swiss-Prot version  ... 
doi:10.1093/bioinformatics/btq011 pmid:20089515 pmcid:PMC2828119 fatcat:726ub4e6ozbnpnqi6sz2avc77a