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The resulting database, ProteinWorldDB, which contains coordinates of pairwise protein alignments and their respective scores, is now made available. ... ProteinWorldDB is integrated with annotations derived from Swiss-Prot, Pfam, KEGG, NCBI Taxonomy database and gene ontology. ... Briefly, a set of 3 812 663 proteins from RefSeq version 21-consisting of all predicted proteins encoded in 458 completely sequenced and unfinished genomes-and 254 609 proteins from Swiss-Prot version ...doi:10.1093/bioinformatics/btq011 pmid:20089515 pmcid:PMC2828119 fatcat:726ub4e6ozbnpnqi6sz2avc77a