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Protein Sequence Annotation Tool (PSAT): a centralized web-based meta-server for high-throughput sequence annotations

Elo Leung, Amy Huang, Eithon Cadag, Aldrin Montana, Jan Lorenz Soliman, Carol L. Ecale Zhou
2016 BMC Bioinformatics  
Here we introduce the Protein Sequence Annotation Tool (PSAT), a web-based, sequence annotation meta-server for performing integrated, high-throughput, genome-wide sequence analyses.  ...  input protein fasta data sets, and (3) provide a web interface for convenient execution of the tools.  ...  Additional funding for revision of the server was provided by the U.S. Department of Energy (DOE) Genomic Science Program under contract SCW1039.  ... 
doi:10.1186/s12859-016-0887-y pmid:26792120 pmcid:PMC4721133 fatcat:4lrqeqa7lnaptls6rhlolrflya

Development of methods for the automated annotation of prokaryotic proteomes

Alexandre Gattiker, Amos Marc Bairoch, Ron David Appel
Annotation may also be supplied by as Third-Party Annotation (TPA) linked to a published paper, when such a paper refers to an already existing sequence.  ...  A method based on profiles, patterns and publicly released computational analysis tools was developed to annotate protein sequences based on rules.  ...  PSAT is a Perl package composed of several libraries. A controller dispatches calculations to one or several remote UNIX PSAT servers.  ... 
doi:10.13097/archive-ouverte/unige:726 fatcat:md3t7oqxmncxbg7zzsfbobuvpq

Wide-scale population genomics of Atlantic bluefin tuna (Thunnus thynnus) inferred by novel high-throughput technology Presentata da: Dott.ssa Eleonora Pintus Coordinatore Dottorato Relatore

Enrico Dinelli, Fausto Tinti
A Al lm ma a M Ma at te er r S St tu ud di io or ru um m-U Un ni iv ve er rs si it tà à d di i B Bo ol lo og gn na a DOTTORATO DI RICERCA IN SCIENZE AMBIENTALI: TUTELA E GESTIONE DELLE RISORSE NATURALI  ...  For long proteins where Blastp search failed, the NCBI Blast web tool results (applying same parameters) were added to the Blast2GO project.  ...  Stanke M, Steinkamp R, Waack S, Morgenstern B (2004) AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Research 32, W309-W312.  ...