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Synchrotron radiation circular dichroism spectroscopy of proteins: secondary structure, fold recognition and structural genomics
2001
Current Opinion in Chemical Biology
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We thank Anthony Willis of Oxford University for the quantitative amino acid analyses to determine protein concentrations. ...
This work was supported by grants from the BBSRC, including a Structural Biology Centre grant to the CPMSD (Gareth Jones, PI), and a project grant and beamtime awards (to BAW). ...
Recent developments in instrumentation and bioinformatics show that the technique of synchrotron radiation circular dichroism spectroscopy can provide novel information on protein secondary structures ...
doi:10.1016/s1367-5931(00)00243-x
pmid:11578931
fatcat:dqj4rvw6s5da7kexaoylgng6jm
Circular Dichroism Techniques: Biomolecular and Nanostructural Analyses- A Review
2009
Chemical Biology and Drug Design
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dichroism, high pressure liquid chromatography circular dichroism, stopped-flow circular dichroism, and synchrotron radiation circular dichroism. ...
Also, we have described here the most important applications of circular dichroism spectroscopy in structural biochemistry and nanoscience. ...
Yaghoub Fathollahi for editing of the manuscript. ...
doi:10.1111/j.1747-0285.2009.00847.x
pmid:19566697
fatcat:5sxmq7rdrncujm5i7gto75ihaq
Synchrotron Radiation Circular Dichroism (SRCD) spectroscopy: New beamlines and new applications in biology
2007
Spectroscopy (Ottawa)
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Circular Dichroism (SRCD) spectroscopy to become a useful tool for structural and functional biology. ...
New advances in instrumentation, demonstration of proof-of-principle studies, and development of new tools and methods for data analysis and interpretation have enabled the technique of Synchrotron Radiation ...
Acknowledgements Supported by a project grant from the UK BBSRC to B.A.W., a BBSRC China Partnering Award to B.A.W. and R.W.J., and a grant (10635060) from the National Natural Science Foundation of China ...
doi:10.1155/2007/282713
fatcat:ct66q5jm4ralrdrzhs2n6kzbxe
Synergistic use of synchrotron radiation techniques for biological samples in solution: a case study on protein-ligand recognition by the peroxisomal import receptor Pex5p
2004
Journal of Synchrotron Radiation
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Circular dichroism spectropolarimetry and X-ray scattering data, obtained using synchrotron radiation, can yield information about the secondary and tertiary structure of proteins in solution. ...
Implications of the combined use of synchrotronbased circular dichroism spectropolarimetry and X-ray scattering in structural biology and proteomics are discussed. ...
Synchrotron radiation circular dichroism spectropolarimetry (SRCD) has emerged as a powerful technique for evaluating the secondary structure of proteins in solution (Wallace, 2000; Wallace & Janes, 2001 ...
doi:10.1107/s090904950402504x
pmid:15496737
fatcat:56ma7ku3evb3napalsv37nm4be
Protein characterisation by synchrotron radiation circular dichroism spectroscopy
2009
Quarterly Reviews of Biophysics (print)
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Synchrotron radiation circular dichroism (SRCD) spectroscopy extends the utility of conventional CD spectroscopy (i.e. using laboratory-based instruments) because the high light flux from a synchrotron ...
Circular dichroism (CD) spectroscopy is a well-established technique for the study of proteins. ...
Introduction 319 1.1 Circular dichroism spectroscopy 319 1.2 Synchrotron radiation circular dichroism spectroscopy 319 1.3 The development of synchrotron radiation circular dichroism spectroscopy for the ...
doi:10.1017/s003358351000003x
pmid:20450533
fatcat:3d5vjd7kxzfnjbvivsyawfyxp4
A reference database for circular dichroism spectroscopy covering fold and secondary structure space
2006
Computer applications in the biosciences : CABIOS
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circular dichroism (SRCD) spectra to more accurately predict secondary structure than has been possible with existing reference datasets. ...
Motivation: Circular Dichroism (CD) spectroscopy is a longestablished technique for studying protein secondary structures in solution. ...
INTRODUCTION Circular dichroism (CD) spectroscopy is a valuable method for determining the secondary structural content of proteins (Woody, 1996; Johnson, 1999; Kelly et al., 2005) . ...
doi:10.1093/bioinformatics/btl327
pmid:16787970
fatcat:tbo7x7762revvprk2c2a3il4ma
Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations
2008
BMC Bioinformatics
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In addition, combining the extra information content available from synchrotron radiation circular dichroism data with sequence methods also shows improvements. ...
Protein secondary structures can also be determined experimentally from circular dichroism, and infrared spectroscopic data using empirical analysis methods. ...
Wallace and members of the Wallace Lab of the School of Crystallography, Birkbeck College, University of London for useful discussions. ...
doi:10.1186/1471-2105-9-24
pmid:18197968
pmcid:PMC2253515
fatcat:6syxyaxyhjfppmiph3mstcsvmq
Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy in structural biology: an overview
2019
Biophysics and Physicobiology
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Circular dichroism spectroscopy is widely used for analyzing the structures of chiral molecules, including biomolecules. ...
The VUVCD spectra of proteins markedly improves the accuracy of predicting the contents and number of segments of the secondary structures, and their amino acid sequences when combined with bioinformatics ...
Most of the instruments use nitrogen purge and the technique is widely called synchrotron-radiation circular dichroism (SRCD) spectroscopy, which is equivalent to SR-VUVCD spectroscopy used in this review ...
doi:10.2142/biophysico.16.0_41
pmid:30923662
pmcid:PMC6435020
fatcat:47vril7z3bbhjlzjns6zyqd6j4
Tools and methods for circular dichroism spectroscopy of proteins: a tutorial review
2021
Chemical Society Reviews
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Circular dichroism (CD) spectroscopy is a widely-used method in biochemistry, structural biology and pharmaceutical chemistry. ...
More than 24 000 papers published in the past decade have included CD characterisations of proteins; many of those studies have also included other complementary chemical, biophysical, and computational ...
Acknowledgements This work was supported by grants from the UK Biotechnology and Biological Sciences Research Council (BBSRC) Bioinformatics and Biological Resources Fund (most recently, BB/P024092 to ...
doi:10.1039/d0cs00558d
pmid:34132259
pmcid:PMC8328188
fatcat:hcd4dc4svbfn7otoicvcyrzt6y
Synchrotron radiation circular dichroism spectroscopy of proteins and applications in structural and functional genomics
2006
Chemical Society Reviews
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The development of synchrotron radiation circular dichroism (SRCD), using the intense light of a synchrotron beam, has greatly expanded the utility of the method, especially as a tool for both structural ...
The technique of Synchrotron Radiation Circular Dichroism (SRCD) spectroscopy and its advantages over conventional circular dichroism spectroscopy are described in this tutorial review, as well as recent ...
Acknowledgements Our SRCD studies have been supported by grants from the BBSRC to BAW. AJM was supported by a studentship from the MRC. ...
doi:10.1039/b316168b
pmid:16365641
fatcat:manm3fwi55by3iwrud7tdhjhnq
Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy
2015
Proceedings of the National Academy of Sciences of the United States of America
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Circular dichroism (CD) spectroscopy is a widely used technique for the study of protein structure. ...
Previously, only the tertiary structure class (all-α, all-β, α + β, α/β, and denatured) could be predicted from the CD spectra by CLUSTER algorithm in CDPro package (12, 32) . ...
doi:10.1073/pnas.1500851112
pmid:26038575
pmcid:PMC4475991
fatcat:aclmea7b4fbublodylrjs2uerm
Characterisation of the selective binding of antibiotics vancomycin and teicoplanin by the VanS receptor regulating type A vancomycin resistance in the enterococci
2017
Biochimica et Biophysica Acta - General Subjects
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In vitro approaches were used to screen the structural and activity effects of a range of potential ligands with purified VanSA protein. ...
Furthermore, binding of the antibiotics induced quicker, longer-lived phosphorylation states for VanSA, proposing them as activators of type A vancomycin resistance in the enterococci. ...
Following the production of pure and active protein, biophysical approaches including circular dichroism (CD), magnetic synchrotron radiation circular dichroism (MSRCD) and fluorescence spectroscopy in ...
doi:10.1016/j.bbagen.2017.05.011
pmid:28511809
pmcid:PMC5482315
fatcat:ewdrkc4zxbepbfmgjn6yxfvuuu
Circular dichroism spectroscopy of membrane proteins
2016
Chemical Society Reviews
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Circular dichroism spectra of helical bundle (red), beta barrel (blue), and mixed helical/sheet/unordered (green) membrane proteins. ...
Access to the ISA and Soleil Synchrotrons was aided by the European Community Research Infrastructure Action under the FP6 ''Structuring the European Research Area'' Programme; travel ...
Our SRCD and CD studies have been supported over the years by grants from the U.K. ...
doi:10.1039/c5cs00084j
pmid:27347568
fatcat:aegagmgaujefjnoioe7dltkyfu
Applications of Synchrotron-Based Spectroscopic Techniques in Studying Nucleic Acids and Nucleic-Acid-Based Nanomaterials
[chapter]
2018
Synchrotron Radiation in Materials Science
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Fingerprints of bonding motifs in DNA duplexes of adenine and thymine revealed from circular dichroism: synchrotron radiation experiments and TDDFT calculations. ...
., and Nielsen, S.B. (2012) Probing electronic coupling between adenine bases in RNA strands from synchrotron radiation circular dichroism experiments. ...
and National Institute of Health (GM124316 and MH110975). ...
doi:10.1002/9783527697106.ch18
fatcat:ciwu37cusjf47dabzla26ljjlu
Calcium, Acylation, and Molecular Confinement Favor Folding ofBordetella pertussisAdenylate Cyclase CyaA Toxin into a Monomeric and Cytotoxic Form
2014
Journal of Biological Chemistry
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Acknowledgements We acknowledge SOLEIL for provision of synchrotron radiation facilities (Proposal ID 20110586 and 20120444) and we thank Frank Wien for assistance in using Disco beamline. ...
The project was supported by the Agence Nationale de la Recherche, programme Jeunes Chercheurs (grant ANR-09-JCJC-0012), the Institut Pasteur Projet Transversal de Recherche PTR#374, Jacob class of Pasteur-Paris ...
Synchrotron Radiation Circular Dichroism spectroscopy Synchrotron Radiation Circular dichroism (SR-CD) spectra were recorded on DISCO beamline at the synchrotron facility SOLEIL, (Gif-sur-Yvette, France ...
doi:10.1074/jbc.m114.580852
pmid:25231985
pmcid:PMC4215248
fatcat:kq5y64tjt5fldg3csaasdlqedi
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