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Populous: A Tool For Populating OWL Ontologies From Templates

Simon Jupp, Simon Jupp
2010 Nature Precedings  
A cell type is equivalent to a cell type that is part of some anatomy! Pabern OPPL Script Pabern  ...  Variables Create axioms Pabern OPPL Script Ontology Pre--Processing Language ?cell:CLASS, ! ?anatomyPart:CLASS, ! ?anatomy:CLASS = ! ! !(CL:0000000 part_of some ?anatomyPart)! !  ... 
doi:10.1038/npre.2010.5419.1 fatcat:dkejopdcv5hsjofeesiwdlzvpu

Populous: A Tool For Populating OWL Ontologies From Templates

Simon Jupp, Simon Jupp
2010 Nature Precedings  
We present Populous, a tool for gathering content with which to populate an ontology.  ...  a value for a given entity attribute.  ...  ontology editor is a more flexible tool for transforming arbitrary spreadsheet data into OWL.  ... 
doi:10.1038/npre.2010.5419 fatcat:4qdudpphibes5cywfmm7zwguhe

Populous: a tool for building OWL ontologies from templates

Simon Jupp, Matthew Horridge, Luigi Iannone, Julie Klein, Stuart Owen, Joost Schanstra, Katy Wolstencroft, Robert Stevens
2011 BMC Bioinformatics  
Results: We present Populous, a tool for gathering content with which to construct an ontology.  ...  Populous is by no means a replacement for standard ontology editing tools, but instead provides a useful platform for engaging a wider community of scientists in the mass production of ontology content  ...  Acknowledgements We kindly acknowledge Mikel Egaña Aranguren for advice, requirements and testing Populous.  ... 
doi:10.1186/1471-2105-13-s1-s5 pmid:22373396 pmcid:PMC3471341 fatcat:p4kddd6bcbgupi2lkoqp7ol5wy

Populous: A tool for populating ontology templates [article]

Simon Jupp, Matthew Horridge, Luigi Iannone, Julie Klein, Stuart Owen, Joost Schanstra, Robert Stevens, Katy Wolstencroft
2010 arXiv   pre-print
We present Populous, a tool for gathering content with which to populate an ontology.  ...  a value for a given entity attribute.  ...  ontology editor is a more flexible tool for transforming arbitrary spreadsheet data into OWL.  ... 
arXiv:1012.1745v1 fatcat:jwqov524fvgr7ffqiy4ia2uzty

Template-Based Ontology Population for Smart Environments Configuration [chapter]

Sebastián Aced López, Dario Bonino, Fulvio Corno
2014 Lecture Notes in Computer Science  
This paper presents a template based approach, which increases accuracy, ease of use, and time-effectiveness of the ontology population process by reducing the amount of user-given information of about  ...  Ontologies, in particular, are used as core modeling languages for representing devices, systems and environments.  ...  (unless the reference ontology itself changes) by the Template Factory, aims to create a template for each target class.  ... 
doi:10.1007/978-3-319-06859-6_24 fatcat:3g6majp4sjdhleksdwpix4pzcy

SimPHO: An ontology for simulation modeling of population health

Anya Okhmatovskaia, David L. Buckeridge, Arash Shaban-Nejad, Andrew Sutcliffe, Jacek A. Kopec, Philippe Fines, Michael C. Wolfson
2012 Proceedings Title: Proceedings of the 2012 Winter Simulation Conference (WSC)  
To address this issue, we are developing the Ontology for Simulation Modeling of Population Health (SimPHO) -a formal, explicit, computer-readable approach to describing population health simulation models  ...  To illustrate the use of SimPHO, we describe one software application driven by this ontology, an automated visualization tool for generating interactive web-based diagrams of population health simulation  ...  The development of a standard ontology providing a conceptual frame-work and software tools to formally, explicitly and consistently describe simulation models of population health is essential for promoting  ... 
doi:10.1109/wsc.2012.6465128 dblp:conf/wsc/OkhmatovskaiaBSSFKW12 fatcat:ou2q6vp6ibgr5ib6oqbdlhoo6m

Enrichment/Population of Customized CPR (Computer-based Patient Record) Ontology from Free-text Reports for CSI (Computer Semantic Interoperability)

David Mendes, Irene Pimenta Rodrigues, Carlos Rodriguez-Solano, Carlos Baeta
2012 Procedia Technology - Elsevier  
In order to formalize an automated acquisition from semistructured, free-form, natural language texts in Portuguese into a Clinical Practice Ontology an important step is to develop the ability of decoding  ...  Ways for heterogeneous computer systems to "understand" important facts from the clinical process for clinical decision support are now beginning to be addressed.  ...  We demonstrate the articulation needed of different software tools, as well as individual medical knowledge, to extract the individual clinical concepts to develop personal TMs for automatic alignment  ... 
doi:10.1016/j.protcy.2012.09.083 fatcat:gnu5zhuzezb37npwdbqkjzzkha

Enrichment/Population of Customized CPR (Computer-Based Patient Record) Ontology from Free-Text Reports for CSI (Computer Semantic Interoperability)

David Mendes, Irene Pimenta Rodrigues, Carlos Rodriguez-Solano, Carlos Fernandes Baeta
2014 Journal of Information Technology Research  
In order to formalize an automated acquisition from semistructured, free-form, natural language texts in Portuguese into a Clinical Practice Ontology an important step is to develop the ability of decoding  ...  Ways for heterogeneous computer systems to "understand" important facts from the clinical process for clinical decision support are now beginning to be addressed.  ...  We demonstrate the articulation needed of different software tools, as well as individual medical knowledge, to extract the individual clinical concepts to develop personal TMs for automatic alignment  ... 
doi:10.4018/jitr.2014010101 fatcat:t3ruuqg4f5fmfeojqq3rsots5i

Global Machine Learning for Spatial Ontology Population

Parisa Kordjamshidi, Marie-Francine Moens
2015 Social Science Research Network  
To make a mapping between natural language and the spatial ontology, we propose a novel global machine learning framework for ontology population.  ...  The advantage of the proposed global learning model is the scalability of the inference, and the flexibility for automatically describing text with arbitrary semantic labels that form a structured ontological  ...  Acknowledgements The research was funded by the KU Leuven grant DBOF/08/043, the EU FP7-296703 project MUSE (Machine Understanding for interactive Story tElling) and by the KU Leuven Postdoctoral grant  ... 
doi:10.2139/ssrn.3199172 fatcat:odzou2qnwjdotlpgsn4krw2pbm

Global machine learning for spatial ontology population

Parisa Kordjamshidi, Marie-Francine Moens
2015 Journal of Web Semantics  
To make a mapping between natural language and the spatial ontology, we propose a novel global machine learning framework for ontology population.  ...  The advantage of the proposed global learning model is the scalability of the inference, and the flexibility for automatically describing text with arbitrary semantic labels that form a structured ontological  ...  Acknowledgements The research was funded by the KU Leuven grant DBOF/08/043, the EU FP7-296703 project MUSE (Machine Understanding for interactive Story tElling) and by the KU Leuven Postdoctoral grant  ... 
doi:10.1016/j.websem.2014.06.001 fatcat:amojkc74jbg3nabsneelt4a44m

Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates

Simon Jupp, Tony Burdett, Danielle Welter, Sirarat Sarntivijai, Helen Parkinson, James Malone
2016 Journal of Biomedical Semantics  
Webulous provides infrastructure to specify templates for populating ontology design patterns that get transformed into OWL assertions in a target ontology.  ...  Authoring bio-ontologies is a task that has traditionally been undertaken by skilled experts trained in understanding complex languages such as the Web Ontology Language (OWL), in tools designed for such  ...  Acknowledgements We acknowledge core funds from EMBL-EBI, this work is also funded in part by the National Center for Biomedical Ontology, one of the National Centers for Biomedical Computing funded by  ... 
doi:10.1186/s13326-016-0055-3 pmid:27042287 pmcid:PMC4818523 fatcat:5id6btkb5zc7bo4kgvk2phfoae

Populating an Allergens Ontology Using Natural Language Processing and Machine Learning Techniques [chapter]

Alexandros G. Valarakos, Vangelis Karkaletsis, Dimitra Alexopoulou, Elsa Papadimitriou, Constantine D. Spyropoulos
2005 Lecture Notes in Computer Science  
This paper presents our approach for populating a formally defined ontology for the allergen domain exploiting PubMed abstracts on allergens and using natural language processing and machine learning techniques  ...  Ontologies are becoming increasingly important in the biomedical domain since they enable the re-use and sharing of knowledge in a formal, homogeneous and unambiguous way.  ...  Brusic and his team at the Institute for Infocomm Research, Singapore, for providing the PubMed abstracts on allergens and commenting on various stages of this work.  ... 
doi:10.1007/11527770_38 fatcat:iftd6ifosfd2vodmjw75lxh6q4

A Template-Based Markup Tool for Semantic Web Content [chapter]

Brian Kettler, James Starz, William Miller, Peter Haglich
2005 Lecture Notes in Computer Science  
OWL promises to bring semantics to this markup to improve its machine understandability. A usable markup tool is becoming a barrier to the more widespread use of OWL markup in operational settings.  ...  SMT uses automatic text extractors and templates to hide ontological complexity from end users and helps them quickly specify events and relationships of interest in the document.  ...  Jeff Heflin (now at Lehigh University) developed the SHOE Knowledge Annotator which was one of the first ontology markup-based tools for the Web, as part of the pre-DAML work done by the University of  ... 
doi:10.1007/11574620_33 fatcat:vwqvurunbracrfmhi52nbzl65u

Chinese news event 5W1H semantic elements extraction for event ontology population

Wei Wang
2012 Proceedings of the 21st international conference companion on World Wide Web - WWW '12 Companion  
The approach comprises a key event identification step, an event semantic elements extraction step and an event ontology population step.  ...  At last we populate the extracted facts of news events to NOEM, an event ontology designed specifically for modeling semantic elements and relations of events.  ...  By using a predefined template, we can automatically generate an OWL (Web Ontology Language) 5 file for extracted event facts and import them into the ontology to build an event knowledge base.  ... 
doi:10.1145/2187980.2188008 dblp:conf/www/Wang12a fatcat:h6gamq223jeebn57grn66s3lby

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns

Zuoshuang Xiang, Jie Zheng, Yu Lin, Yongqun He
2015 Journal of Biomedical Semantics  
The input data file is generated based on a template file created by a specific ODP (text or Excel format). Ontorat is an efficient tool for ontology expansion. Different use cases are described.  ...  Because ontology terms often follow specific ODPs, the Ontology for Biomedical Investigations (OBI) developers proposed a Quick Term Templates (QTTs) process targeted at generating new ontology classes  ...  The article-processing fee for this article was paid by a bridge fund to YH at the Unit for Laboratory Animal Medicine (ULAM) in the University of Michigan Medical School.  ... 
doi:10.1186/2041-1480-6-4 pmid:25785185 pmcid:PMC4362828 fatcat:nqnxmvxsmvbizdabzczxppvdri
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