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PlantCARE, a plant cis-acting regulatory element database

S. Rombauts, P. Dehais, M. Van Montagu, P. Rouze
<span title="1999-01-01">1999</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors.  ...  PlantCARE is a relational database available via the web at the URL: http://sphinx.rug.ac.be:8080/PlantCARE/  ...  cis-acting regulatory elements.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/27.1.295">doi:10.1093/nar/27.1.295</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/9847207">pmid:9847207</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC148162/">pmcid:PMC148162</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/sniq4j6p4vde3hxn3wz5n236tu">fatcat:sniq4j6p4vde3hxn3wz5n236tu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180723234654/https://biblio.ugent.be/publication/112735/file/4167563" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e2/a3/e2a38d400050089ede476c27d451e3169ae02e14.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/27.1.295"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC148162" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

M. Lescot
<span title="2002-01-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors.  ...  New features have been implemented to search for plant cis-acting regulatory elements in a query sequence.  ...  DATABASE STATUS AND AVAILABILITY At present, we have collected 417 cis-acting regulatory elements, of which 150 are from monocotyledonous species, 263 from dicotyledonous species and four from conifers  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/30.1.325">doi:10.1093/nar/30.1.325</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11752327">pmid:11752327</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC99092/">pmcid:PMC99092</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6hr7auli5bazhpne7l26sd3a4e">fatcat:6hr7auli5bazhpne7l26sd3a4e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20040617072112/http://www.esat.kuleuven.ac.be:80/~kmarchal/pubs/Lescot.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/86/54/86545a23a07bdaa7cdc1b43e6de07b2a0883448d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/30.1.325"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC99092" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Isolation and analysis of a multifunctional triterpene synthase KcMS promoter region from mangrove plant kandelia candel

M Basyuni, R Wati, N Sulistiyono, Sumardi, H Oku, S Baba, H Sagami
<span title="">2018</span> <i title="IOP Publishing"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/d5gw7zsbm5fwlb6lvahgsi3ngu" style="color: black;">IOP Conference Series: Earth and Environment</a> </i> &nbsp;
PLACE and PlantCARE analysis of the KcMS promoter revealed that there was some regulatory elements in response to environmental signals and involved in the regulation of gene expression.  ...  The presence of multipotential regulatory motifs suggested that KcMS may be involved in regulation of plant tolerance to several types of stresses.  ...  elements To elucidate the transcriptional regulation of KcMS promoter, the upstream was isolated and analyzed for various putative cis-acting elements using PLACE and PlantCARE databases.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1088/1755-1315/130/1/012013">doi:10.1088/1755-1315/130/1/012013</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dnw42ucelzhphpuub6dcy7gdym">fatcat:dnw42ucelzhphpuub6dcy7gdym</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180725143653/http://iopscience.iop.org/article/10.1088/1755-1315/130/1/012013/pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/aa/9d/aa9d4ec91be96233e92399bbed33c33f0bf4a2e1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1088/1755-1315/130/1/012013"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> iop.org </button> </a>

Short Communication Molecular cloning and characterization of GbDXS and GbGGPPS gene promoters from Ginkgo biloba

F. Xu, X.H. Huang, L.L. Li, G. Deng, H. Cheng, X.F. Rong, J.B. Li, S.Y. Cheng
<span title="">2013</span> <i title="Genetics and Molecular Research"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tf4txbjapvcg5ds7uwx3x2vhnm" style="color: black;">Genetics and Molecular Research</a> </i> &nbsp;
The sequence region was analyzed using the plant cis-acting regulatory element (CARE) database (http://www.dna.affrc.go.jp/PLACE and http://bioinformatics.psb. ugent.be/webtools/plantcare/html/).  ...  In addition to these essential cis-acting elements, other corresponding stress-related cis-elements in the promoter region of GbDXS were also predicted by the PlantCARE database, such as the I box, MYB-ST  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4238/2013.february.4.3">doi:10.4238/2013.february.4.3</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23408416">pmid:23408416</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/jel54vrs4bddzcvtzj4nc6ggda">fatcat:jel54vrs4bddzcvtzj4nc6ggda</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170814141019/http://www.funpecrp.com.br/gmr/year2013/vol12-1/pdf/gmr2138.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d6/f2/d6f2f9636c6d6e7fef5bcf7905041b365d9251a7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4238/2013.february.4.3"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Cloning and functional analysis of the chitinase gene promoter in peanut

X.L. Chen, R.T. Song, M.Y. Yu, J.M. Sui, J.S. Wang, L.X. Qiao
<span title="">2015</span> <i title="Genetics and Molecular Research"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tf4txbjapvcg5ds7uwx3x2vhnm" style="color: black;">Genetics and Molecular Research</a> </i> &nbsp;
The upstream promoter sequence of the chitinase gene was cloned by TAIL-PCR and the potential cis-regulatory elements in this promoter were predicted by the cis-element databases PLACE and plantCARE.  ...  Consideration of the cis-regulatory elements predicted by PLACE and plantCARE suggested that AS-1, GRWAAW, and W-box are positive regulatory elements in P 2 and P 3 and that GT1-motif and TGTCA are negative  ...  Function prediction of the peanut chitinase gene promoter The relevant cis-elements within Ah-Chi-P were predicted using the plant cis-acting regulatory element databases PLACE (http://www.dna.affrc.go.jp  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4238/2015.october.19.15">doi:10.4238/2015.october.19.15</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26505422">pmid:26505422</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2l7hwyxqlrcljpatdxklpcyksm">fatcat:2l7hwyxqlrcljpatdxklpcyksm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190224110849/http://pdfs.semanticscholar.org/5727/f3f05271c1eac3ade82fb022e0a3c514ab0c.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/57/27/5727f3f05271c1eac3ade82fb022e0a3c514ab0c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4238/2015.october.19.15"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Analysis of promoters of microRNAs from a Glycine max degradome library

Yi-qiang Han, Zheng Hu, Dian-feng Zheng, Ya-mei Gao
<span title="">2014</span> <i title="Zhejiang University Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/bkepz6pyyjc4ffgne2lo4fuegy" style="color: black;">Journal of Zhejiang University SCIENCE B</a> </i> &nbsp;
We used bioinformatics methods to predict the core promoters of 440 miRNAs identified from a soybean (Glycine max) degradome library and to analyze cis-acting elements for 369 miRNAs.  ...  The cis-acting elements were examined to provide clues to the function and regulation of spatiotemporal expression of the miRNAs.  ...  The PlantCARE database (http://bioinformatics.psb.ugent.be/webtools/plantcare/ html), a database of plant cis-acting regulatory elements (Lescot et al., 2002) , was used to analyze the cis-acting elements  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1631/jzus.b1300179">doi:10.1631/jzus.b1300179</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24510705">pmid:24510705</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3924388/">pmcid:PMC3924388</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dbannf2pazhs3aer5druhmf2fu">fatcat:dbannf2pazhs3aer5druhmf2fu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180729144119/https://link.springer.com/content/pdf/10.1631%2Fjzus.B1300179.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/15/be/15be7d95bc1b4ad6c0011de72eab42573df2ec1c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1631/jzus.b1300179"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3924388" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Conserved structure of the NPR1 gene distal promoter isolated from a chili pepper (Capsicum annuum L.) in West Sumatera

Jamsari Jamsari, Maythesya Oktavioni, Bastian Nova, Ifan Aulia Candra, Alfi Asben, Lily Syukriani
<span title="2019-09-24">2019</span> <i title="F1000 ( Faculty of 1000 Ltd)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lz7xw3k77zcg5f66jhfurufu64" style="color: black;">F1000Research</a> </i> &nbsp;
Identification of a cis-acting element was detected by PLACE, PlantCare, and PlantPAN. Results: Isolation of the complete distal promoter sequence of PD_CbNPR1 produced a fragment 5,950 bp in size.  ...  The cis-acting elements of its distal promoter gene are characterized by salicylic acid inducing elements such as the W-box, RAV1AAT and ASF1, accompanied by enhancer and silencer elements.  ...  The search for putative cis-acting regulatory elements in the putative promoter of PD_CbNPR1 should also include other databases such as: a.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.17374.2">doi:10.12688/f1000research.17374.2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6ioap6t625gn7mxvrywysivzca">fatcat:6ioap6t625gn7mxvrywysivzca</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200223030439/https://f1000researchdata.s3.amazonaws.com/manuscripts/22642/d73e2daa-5001-4663-adb0-5c16d5cb08b6_17374_-_jamsari_jamsari_v2.pdf?doi=10.12688/f1000research.17374.2&amp;numberOfBrowsableCollections=20&amp;numberOfBrowsableInstitutionalCollections=5&amp;numberOfBrowsableGateways=22" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3f/f6/3ff6451e9400a69fddfc0b3f0b6849d56762338d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.12688/f1000research.17374.2"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Carrot AOX2a Transcript Profile Responds to Growth and Chilling Exposure

Maria Doroteia Campos, Catarina Campos, Amaia Nogales, Hélia Cardoso
<span title="2021-11-03">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3wvjgpafonfk5f6pu57vw72ave" style="color: black;">Plants</a> </i> &nbsp;
The identification of cis-acting regulatory elements (CAREs) located at the promoters of both genes showed putative sequences involved in cold stress responsiveness, as well as growth.  ...  Alternative oxidase (AOX) is a key enzyme of the alternative respiration, known to be involved in plant development and in response to various stresses.  ...  Acknowledgments: The authors are grateful to FCT-Fundação para a Ciência e a Tecnologia for the support given to HC, CC (contracts award through the Decret-Law n.º 57/2016 from 29 August), and to AN (CEECIND  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/plants10112369">doi:10.3390/plants10112369</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34834732">pmid:34834732</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8625938/">pmcid:PMC8625938</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/esm2vxt6kvg2be4ezhmaw5cktu">fatcat:esm2vxt6kvg2be4ezhmaw5cktu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20211120230033/https://mdpi-res.com/d_attachment/plants/plants-10-02369/article_deploy/plants-10-02369-v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/02/e6/02e607cf75a994c54626c9fbaa38d4f06faa6a92.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/plants10112369"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8625938" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Genome-wide identification, characterization and phylogenetic analysis of Dicer-like (DCL) gene family in Coffea arabica

Md. Parvez Mosharaf, Bioinformatics Laboratory, Department of Statistics, University of Rajshahi, Rajshahi-6205, Bangladesh
<span title="2019-11-30">2019</span> <i title="Biomedical Informatics"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/iztfdaqh6bclfpgb2mitxtn5sm" style="color: black;">Bioinformation</a> </i> &nbsp;
Moreover, the subcellular location of the reported DCL proteins and the associated cis-acting regulatory elements were also identified and discussed in this report.  ...  The cis-regulatory elements indicated the biological and molecular functional diversity of the identified DCL genes related with plant growth and development.  ...  The cisregulatory elements were searched against the CaDCL into the PlantCARE database (http://bioinformatics.psb.ugent.be/ webtools/plantcare/html/), which is a database of plant promoters and cis-acting  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6026/97320630015824">doi:10.6026/97320630015824</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31902983">pmid:31902983</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6936657/">pmcid:PMC6936657</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/r4pw7qc2xnfqzgbxjz6lmx6b3y">fatcat:r4pw7qc2xnfqzgbxjz6lmx6b3y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200209222550/http://www.bioinformation.net/015/97320630015824.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4d/c0/4dc0f6ab6836473567fe48b34aa6c03fb4e44c4c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6026/97320630015824"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6936657" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Isolation and in silico analysis of promoter of a high salinity stress-regulated pea DNA helicase 45

Marjan M. Tajrishi, Narendra Tuteja
<span title="">2011</span> <i title="Informa UK Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f4nk66acg5bczfwqipyzl7364q" style="color: black;">Plant Signalling &amp; Behavior</a> </i> &nbsp;
Sequence analysis for identification of cis-regulatory elements followed by using PLACE and PlantCARE database.  ...  Promoter of PDH45 gene contains many cis-regulatory elements including stress related cis-acting elements.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4161/psb.6.10.17106">doi:10.4161/psb.6.10.17106</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21897121">pmid:21897121</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3256367/">pmcid:PMC3256367</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4l33nlxlgngylexqj2fhdknknq">fatcat:4l33nlxlgngylexqj2fhdknknq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200502053007/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3256367&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c4/9d/c49d380c2a5fb0e6e70c2cf9f296bc4db8de975c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4161/psb.6.10.17106"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3256367" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

In silico identification of transcription factors associated with the biosynthesis of carotenoids in corn ( Zea mays L. )

Zahra Zinati, Leyla Nazari, Paolo Bagnaresi, Rudabe Ravash
<span title="">2017</span> <i title="Termedia Sp. z.o.o."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6r7cwl4e6bc6bnddwmbzhihwye" style="color: black;">BioTechnologia</a> </i> &nbsp;
Carotenoids, a diverse group of colorful pigments, contribute to the development, light harvesting and photoprotection in plants as well as human health.  ...  Computational approaches such as Genomatix, PlantPAN, PlantCARE, PlantTFDB and IGDE6 have been used for promoter prediction, regulatory features and transcription factor identification, as well as pairwise  ...  sites using PlantCARE, a web-based database of plant promoters and their Cis-Acting Regulatory Elements (http://bio informatics.psb.ugent.be/webtools/plantcare/html/) (Lescot et al., 2002) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5114/bta.2017.66616">doi:10.5114/bta.2017.66616</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/grb3axzb7nbctetkflkp5adqzi">fatcat:grb3axzb7nbctetkflkp5adqzi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180722071217/http://www.biotechnologia-journal.org/Journal/-85/pdf-29645-10?filename=BTA" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/95/77/9577f28e0fbc6bc04f2cb83f9e70aef7af497ed1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5114/bta.2017.66616"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Molecular Biology Database List

C. Burks
<span title="1999-01-01">1999</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
the databases.  ...  Molecular Biology Database List (MBDL) includes brief descriptions and pointers to Web sites for the various databases described in this issue as well as other Web sites presenting data sets relevant to  ...  gene regulatory relationships, and binding site clusters PlantCARE http://sphinx.rug.ac.be:8080/PlantCARE/ Plant cis-acting regulatory elements, enhancers, and repressors TRRD http://www.bionet.nsc.ru  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/27.1.1">doi:10.1093/nar/27.1.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/9847130">pmid:9847130</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC148085/">pmcid:PMC148085</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lvh6q3gma5aflcivbgvxbuuiwe">fatcat:lvh6q3gma5aflcivbgvxbuuiwe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190308033351/http://pdfs.semanticscholar.org/ec26/553bb5ac046c1b36775ed6338d0588e87355.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ec/26/ec26553bb5ac046c1b36775ed6338d0588e87355.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/27.1.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC148085" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

FUNCTIONAL ANALYSIS OF THE PERSICARIA MINOR SESQUITERPENE SYNTHASE GENE PROMOTER IN TRANSGENIC ARABIDOPSIS THALIANA

Aimi Farehah Omar, Ismanizan Ismail
<span title="2019-06-25">2019</span> <i title="Penerbit UTM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xgym76lve5dw7bbeqkndyfil2u" style="color: black;">Jurnal Teknologi</a> </i> &nbsp;
The presence of cis-element acting as a repressor is expected to be present at the promoter between -1540 to -1078 bp. The region from -1078 to -855 was critical for maximal PmSS promoter activity.  ...  The results revealed the existence of cis regulatory elements that control the regulation of promoter activity in a developmental specific manner at -1758 to -1078 promoter sequences.  ...  PmSS putative promoter sequences was evaluated in silico by using PLACE and PlantCare database to identified cis-regulatory elements.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11113/jt.v81.13460">doi:10.11113/jt.v81.13460</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qoofqiz5f5dfroad5uofpct7ha">fatcat:qoofqiz5f5dfroad5uofpct7ha</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200211020804/https://jurnalteknologi.utm.my/index.php/jurnalteknologi/article/download/13460/6555" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/30/3d/303dbc3942ed49b29024059d620515dd4f915c47.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11113/jt.v81.13460"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Isolation and functional validation of the CmLOX08 promoter associated with signalling molecule and abiotic stress responses in oriental melon, Cucumis melo var. makuwa Makino

Chenghui Wang, Ge Gao, Songxiao Cao, Qunjie Xie, Hongyan Qi
<span title="2019-02-15">2019</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f7dj37omsze4naoihng2oitimy" style="color: black;">BMC Plant Biology</a> </i> &nbsp;
The main cis-elements are represented with different patterns Table 1 1 Identification of cis-acting elements in the CmLOX08 promoter using the PlantCARE and PLACE databases Cis-elements Description  ...  CGTC A-motif), two cis-acting elements involved in heat stress responsiveness (HSE and CCAATBOX1), a cis-acting element involved in low-temperature-induced expression (LTR), an element involved in pathogen-and  ...  The translation initiation codon (ATG) is framed and marked for " Authors' contributions CW contributed to the experimental design, oriental melon planting and sampling, tobacco planting and experimenting  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12870-019-1678-1">doi:10.1186/s12870-019-1678-1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mvw6rtxwpzbulha4ffrz4c3yty">fatcat:mvw6rtxwpzbulha4ffrz4c3yty</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190426204003/https://bmcplantbiol.biomedcentral.com/track/pdf/10.1186/s12870-019-1678-1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/28/5d/285d6c6fafb837de6623fd17e419ba7679b10c83.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12870-019-1678-1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

Cross-talk between Phosphate Starvation and Other Environmental Stress Signaling Pathways in Plants

<span title="">2017</span> <i title="Korean Society for Molecular and Cellular Biology"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ziagfca5onfzbicdtpt6db2zri" style="color: black;">Molecules and Cells</a> </i> &nbsp;
Several types of cis-acting regulatory elements exist in the Pht1;1 promoter, such as P1BS, W box, and MBS.  ...  database (http://bioinformatics.psb.ugent.be/webtools/plantcare/html/).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14348/molcells.2017.0192">doi:10.14348/molcells.2017.0192</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29047263">pmid:29047263</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5682247/">pmcid:PMC5682247</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5pkgacnmjzb2hpzril72ctjcdi">fatcat:5pkgacnmjzb2hpzril72ctjcdi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190304114304/http://pdfs.semanticscholar.org/c616/7ce5d6f67b32fe0a70a898b507cfa5b1e00c.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c6/16/c6167ce5d6f67b32fe0a70a898b507cfa5b1e00c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14348/molcells.2017.0192"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5682247" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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