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Pipengine: an ultra light YAML-based pipeline execution engine

Francesco Strozzi, Raoul Jean Pierre Bonnal
2017 Journal of Open Source Software  
Summary This is an ultra light YAML-based pipeline execution engine.  ...  The bash scripts generated by Pipengine includes a list of features such as: • error controls and logging for each step • the automated generation of directories based on sample and pipeline steps names  ... 
doi:10.21105/joss.00341 fatcat:w4qd54fwfbh5loajnsa4qnvqdq

Lessons learnt on the analysis of large sequence data in animal genomics

F. Biscarini, P. Cozzi, P. Orozco-ter Wengel
2018 Animal Genetics  
: an ultra light YAML-based pipeline execution engine.  ...  A modular pipeline plus YAML serialization format is a powerful combination for the analysis of large sequence data.  ... 
doi:10.1111/age.12655 pmid:29624711 fatcat:vrdnm3ir5vc55m6pfukkvep2ha