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PigGIS: Pig Genomic Informatics System

J. Ruan, Y. Guo, H. Li, Y. Hu, F. Song, X. Huang, K. Kristiensen, L. Bolund, J. Wang
<span title="2007-01-03">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Pig Genomic Information System (PigGIS) is a web-based depository of pig (Sus scrofa) genomic learning mainly engineered for biomedical research to locate pig genes from their human homologs and position  ...  We have also recovered 18 700 SNPs and 20 800 unique 60mer oligonucleotide probes for future pig genome analyses. PigGIS can be freely accessed via the web at  ...  Given such rich pig resources, there is a need to combine them and produce a more complete and versatile annotation. This is the motivation of the Pig Genome Informatics System (PigGIS).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkl808">doi:10.1093/nar/gkl808</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17090590">pmid:17090590</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1669765/">pmcid:PMC1669765</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ssdy5xsuq5g3rjri3jmaqlir4a">fatcat:ssdy5xsuq5g3rjri3jmaqlir4a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190224202730/http://pdfs.semanticscholar.org/5acd/862f3b3cc76124b881838c85850e9888af0a.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5a/cd/5acd862f3b3cc76124b881838c85850e9888af0a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkl808"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669765" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Principales herramientas moleculares empleadas en la ciencia animal

YANI ARANGUREN, ELWI MACHADO, DONICER MONTES V.
<span title="2013-07-12">2013</span> <i title="Universidad de Sucre"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xhcqv2lbmzcd7iniiepiqticyi" style="color: black;">Revista Colombiana de Ciencia Animal Recia</a> </i> &nbsp;
Por lo tanto existen varias bases de datos con bastante completas y fácil de usar para cerdo y pollo como el Pig Genomic Informatics System de la Academia China de Ciencias (PigGIS, http://pig.genomics.org.cn  ...  el Turkey Genome Sequencing Consortium, para la trucha y el salmón The Consortium for Genomics Research, en tilapia el Tilapia Genome Project del Broad Institute y el en abejas Honeybee Genome Sequencing  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.24188/recia.v5.n2.2013.459">doi:10.24188/recia.v5.n2.2013.459</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/refp3ngbwzauzkowcsv4ezlzla">fatcat:refp3ngbwzauzkowcsv4ezlzla</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180414065705/http://revistas.unisucre.edu.co/index.php/recia/article/download/459/505" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fb/fa/fbfa840e9d4ff661f2cca91ba5edb22d5c99f02f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.24188/recia.v5.n2.2013.459"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Unexpected Diversity and Differential Success of DNA Transposons in Four Species of Entamoeba Protozoans

Ellen J. Pritham, Cédric Feschotte, Susan R. Wessler
<span title="2005-05-18">2005</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4bimmtjdczetrfmnc3ijbmwpoy" style="color: black;">Molecular biology and evolution</a> </i> &nbsp;
We report the first comprehensive analysis of transposable element content in the compact genomes (;20 Mb) of four species of Entamoeba unicellular protozoans for which draft sequences are now available  ...  The diversity of DNA transposons and their differential amplification among closely related species with similar compact genomes are discussed in the context of the biology of Entamoeba protozoans.  ...  This work was supported by a postdoctoral research fellowship in Biological Informatics from the National Science Foundation 0107590 to E.J.P. and a grant from the National Science Foundation Plant Genome  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/molbev/msi169">doi:10.1093/molbev/msi169</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15901838">pmid:15901838</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4jygndsf6vavjcuu37yvsemfnu">fatcat:4jygndsf6vavjcuu37yvsemfnu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180730082555/https://watermark.silverchair.com/msi169.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAaAwggGcBgkqhkiG9w0BBwagggGNMIIBiQIBADCCAYIGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMMS0dzDqLTBrq9Ze6AgEQgIIBUzcURYqt1GwGpjfyta5mQ1zEXUbOc-n77GjGx5vQrbTCY0jApjjbLbEB6KLMGFRbSmKEypc3YtzKlK9Je1sIGtUaYG6nvXNTgfRrsNrAFYAvAoQWlhrT5LVRcDrtdBtm-KcKQjYUJqGHmCg5HrsF0JDIrOZxljhQ1zU9ggAKL1qr9cjCF9XHWfETLn1N1GeSF-UTbQSUJb4DBrq5eUbw-wZrbyQ63AC5dSPeZvK5S5ovnBfLktmRLinMxpFN2zeWiqPVxUDpBqkFC6wBKWm8EkqAo5A5pnJ2Jgphe2awY22_qNpU6NnQlwmYkztvFGEbZ5dS8fg-CsQT3yraaEC5NSi3mVO8pMjF5lbmyJFGkTAFueobtL8zvXIPz8CyIoRDRQ3TFJK74MWTiD14Sx31dj6g9GlyOWJdudKs7Ed88pMlDpwTGeoU8trJ7nt2FZcWi6tx8w" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e9/21/e921f6f52592c2beb73f74c31c3f1d2a3558c1e6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/molbev/msi169"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

Alexie Papanicolaou, Marc F. Schetelig, Peter Arensburger, Peter W. Atkinson, Joshua B. Benoit, Kostas Bourtzis, Pedro Castañera, John P. Cavanaugh, Hsu Chao, Christopher Childers, Ingrid Curril, Huyen Dinh (+52 others)
<span title="2016-09-22">2016</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6bzsiicmhvczjnsm7jbog7ysaa" style="color: black;">Genome Biology</a> </i> &nbsp;
Results: The 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A highquality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb.  ...  Availability of data and materials All genome sequence data are publicly available at the NCBI BioProject: PRJNA168120, and RNA-Seq transcriptome data at BioProject: PRJNA198743, with the genome assembly  ...  These and additional genomic resources can also be accessed at the BCM-HGSC sites: https://www.hgsc.bcm.edu/arthropods/ mediterranean-fruit-fly-genome-project and ftp://ftp.hgsc.bcm.edu/I5Kpilot/Mediterranean_fruit_fly  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13059-016-1049-2">doi:10.1186/s13059-016-1049-2</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27659211">pmid:27659211</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5034548/">pmcid:PMC5034548</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xgpl63wfkbh77bhc36jdi25voi">fatcat:xgpl63wfkbh77bhc36jdi25voi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180725153119/http://digital.csic.es/bitstream/10261/149805/1/Genome%20Biology_2016.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d5/f8/d5f8463be000a0b6a5e69f209f42468112cec094.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13059-016-1049-2"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5034548" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Proceedings of the International Symposium

Dominique A. Vuitton, Laurence Millon, Bruno Gottstein, Patrick Giraudoux
<span title="">2014</span> <i title="EDP Sciences"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ft3salehizebloerr5nim4qlse" style="color: black;">Parasite</a> </i> &nbsp;
This recognition has strengthened the network and offered financial and human resources to optimize the links existing between different structures concerned by this disease and set up a quality control system  ...  Various mitochondrial markers (from short sequences to complete mt genomes) have been used, some for >20 years, but there are recent additions to the toolbox, e.g. a LAMP PCR system that allows specific  ...  described a high-quality genome for E. multilocularis, together with draft genomes of three other tapeworm species including E. granulosus.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1051/parasite/2014024">doi:10.1051/parasite/2014024</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/uv77w33rsjbsbduz7tuy75iik4">fatcat:uv77w33rsjbsbduz7tuy75iik4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160402180950/http://www.parasite-journal.org/articles/parasite/pdf/2014/01/parasite140024-s.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e6/84/e6843bbba7e3eba550cf9f2561962778652f5ef7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1051/parasite/2014024"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>