Filters








10 Hits in 13.5 sec

Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cedric Chauve, Sèverine Bérard
2018 BMC Genomics  
carry can differ from the phylogenetic signal carried by gene sequences, more prone to introgression.  ...  However, the detection of genome rearrangements is often hampered by current deficiencies in data and methods: Genomes obtained from short sequence reads have generally very fragmented assemblies, and  ...  Availability of data and materials Data and scripts used in this study are available on the GitHub repository: https://github.com/YoannAnselmetti/ADseq-Anopheles-APBC2018.  ... 
doi:10.1186/s12864-018-4466-7 pmid:29764366 pmcid:PMC5954271 fatcat:e375ybpt5zdedb7r657ymibeti

Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes

Geoffrey M. Attardo, Adly M. M. Abd-Alla, Alvaro Acosta-Serrano, James E. Allen, Rosemary Bateta, Joshua B. Benoit, Kostas Bourtzis, Jelle Caers, Guy Caljon, Mikkel B. Christensen, David W. Farrow, Markus Friedrich (+42 others)
2019 Genome Biology  
Tsetse flies are distinguished from other Diptera by unique adaptations, including lactation and the birthing of live young (obligate viviparity), a vertebrate blood-specific diet by both sexes, and obligate  ...  This work describes the comparative analysis of six Glossina genomes representing three sub-genera: Morsitans (G. morsitans morsitans, G. pallidipes, G. austeni), Palpalis (G. palpalis, G. fuscipes), and  ...  Acknowledgements We thank the production sequencing group of McDonnell Genome Institute at Washington University for the library construction, sequencing, and data curation.  ... 
doi:10.1186/s13059-019-1768-2 pmid:31477173 pmcid:PMC6721284 fatcat:m5fuvhmcnncy5omhtfpiwv54ta

Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution

Andrew M Schurko, John M Logsdon, Brian D Eads
2009 BMC Evolutionary Biology  
Many genes involved in cell cycle regulation and sister chromatid cohesion are characterized by expansions in copy number.  ...  Thousands of parthenogenetic animal species have been described and cytogenetic manifestations of this reproductive mode are well known.  ...  which may represent the closest extant representative of the lineage from which cladocerans arose [112] .  ... 
doi:10.1186/1471-2148-9-78 pmid:19383157 pmcid:PMC2680839 fatcat:vbhvof5agzck7cdbxnnbhgu4yy

Sycamore (Platanus spp) [chapter]

2008 Encyclopedia of Genetics, Genomics, Proteomics and Informatics  
Speciation: The process by which a new species diverges from an ancestral species.  ...  In homoploid hybrid speciation, two ancestral taxa give rise to a third by hybridization without a change of chromosome number, and it may occur in the parasitic species of animals ( .  ...  The signal transducers eventually reach the DNA by the activation of transcription factors.  ... 
doi:10.1007/978-1-4020-6754-9_16470 fatcat:vd3dng4xina5piwpaioaz25tf4

Single Strand Assimilation [chapter]

2008 Encyclopedia of Genetics, Genomics, Proteomics and Informatics  
Speciation: The process by which a new species diverges from an ancestral species.  ...  In homoploid hybrid speciation, two ancestral taxa give rise to a third by hybridization without a change of chromosome number, and it may occur in the parasitic species of animals ( .  ...  The signal transducers eventually reach the DNA by the activation of transcription factors.  ... 
doi:10.1007/978-1-4020-6754-9_15672 fatcat:2x2wsjganfaznnshm5kvluxr7a

The early evolution of meiotic genes

Shehre-Banoo Malik, Shehre-Banoo Malik, Shehre-Banoo Malik, John Logsdon, Debashish Bhattacharya, Christopher, Robert Malone, Bryant, F Mcallister
2007 Biology Commons Recommended Citation Malik   unpublished
verified by phylogenetic analyses.  ...  The homologs of 34 meiotic genes encoding components of the meiotic recombination machinery, sister chromatid cohesion and synaptonemal complexes were identified in the genomes of diverse eukaryotes and  ...  In some cases, gaps or rearranged clones from the available (draft) genome data were discovered, providing evidence that such sequence data should be used judiciously.  ... 
fatcat:l3t75pglmnd37ormys3szz4imy

The Divergence, Actions, Roles, and Relatives of Sodium-Coupled Bicarbonate Transporters

Mark D. Parker, Walter F. Boron
2013 Physiological Reviews  
This review draws together recent advances in our understanding of the phylogenetic origins and physiological relevance of NCBTs and their progenitors.  ...  Each plays a specialized role in maintaining intracellular pH and, by contributing to the movement of HCO 3 Ϫ across epithelia, in maintaining whole-body pH and otherwise contributing to epithelial transport  ...  We also thank members of the Boron lab past and present as well as all those investigators whose studies and personal communications have contributed to fabric of this review.  ... 
doi:10.1152/physrev.00023.2012 pmid:23589833 pmcid:PMC3768104 fatcat:rrdxesgvcvcn5avjqxyh7ct7ia

Thyrotropin Receptor [chapter]

Samer El-Kaissi
2018 Encyclopedia of Signaling Molecules  
Acknowledgments TRPM1-related work conducted in the authors' laboratory is supported by the CREST from Japan Science and Technology Agency, Grant-in-Aid for Scientific Research (B), Takeda Science Foundation  ...  In addition, the readers may access additional information and references on TEAD via the Nature-UCSD signaling gateway: http:// www.signaling-gateway.org/.  ...  by recruited monocytes and synovial joint macrophages (Kassem et al. 2015) .  ... 
doi:10.1007/978-3-319-67199-4_101925 fatcat:uv6mzuosqfblhbycpc64ojzb5i

Ecological genetics and conservation genomics of wolf (Canis lupus)

Marco <1984> Galaverni, Ettore Randi
2012
In the second section, as part of a larger canid genome project, we will exploit NGS data to investigate the transcript-level differences between the wolf and the dog genome that can be correlated to domestication  ...  In the first part, we analyze the variability of three Major Histocompatibility Complex (MHC) class II genes in the Italian wolf population, also studying their possible role in mating choice and their  ...  Based on the extant bibliography, the species in which every allele was found were indicated aside each branch.  ... 
doi:10.6092/unibo/amsdottorato/4674 fatcat:coon6kxgrrgtboqahsdmbgx5iq

The U1A/U2B"/SNF Family of RNA Binding Proteins: Evolution of RNA Binding Specificity and Contributions of Heterotropic Linkage to snRNP Protein Partitioning

Sandra Gisela Williams
2015
Acknowledgments This work is supported in part by NIH (SGW and KBH). Thanks to Dr. Kim Delaney for cloning human U2B″.  ...  Thanks to many members of the Gibbs community who patiently schooled KBH in thermodynamics and appreciated its application to RNA.  ...  Materials and Methods Phylogenetic analysis The protein phylogeny was inferred from extant protein sequences using ML methods.  ... 
doi:10.7936/k7rf5s6n fatcat:mv7566mtmvakxdb3nky3wyyvnu