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Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

R. Sanchez, F. Serra, J. Tarraga, I. Medina, J. Carbonell, L. Pulido, A. de Maria, S. Capella-Gutierrez, J. Huerta-Cepas, T. Gabaldon, J. Dopazo, H. Dopazo
2011 Nucleic Acids Research  
Phylemon 2.0 is a new release of the suite of web tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.  ...  Altogether, Phylemon 2.0 integrates a suite of 30 tools covering sequence alignment reconstruction and trimming; tree reconstruction, visualization and manipulation; and evolutionary hypotheses testing  ...  ACKNOWLEDGEMENTS We sincerely thank all authors providing the agreement to include their programs in this web server. Conflict of interest statement. None declared.  ... 
doi:10.1093/nar/gkr408 pmid:21646336 pmcid:PMC3125789 fatcat:6drjhdzqy5fabj7zakbco3fav4

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

J. Tarraga, I. Medina, L. Arbiza, J. Huerta-Cepas, T. Gabaldon, J. Dopazo, H. Dopazo
2007 Nucleic Acids Research  
It has been developed as a web server that integrates a suite of different tools selected among the most popular stand-alone programs in phylogenetic and evolutionary analysis.  ...  Phylemon is an online platform for phylogenetic and evolutionary analyses of molecular sequence data.  ...  Conflict of interest statement. None declared.  ... 
doi:10.1093/nar/gkm224 pmid:17452346 pmcid:PMC1933211 fatcat:tmoxqpkvgjfozorlogz5xufaiy

Functional lability of RNA-dependent RNA polymerases in animals

Natalia Pinzón, Stéphanie Bertrand, Lucie Subirana, Isabelle Busseau, Hector Escrivá, Hervé Seitz, Gregory S. Barsh
2019 PLoS Genetics  
RdRP genes were present in the ancestors of numerous clades, and they were subsequently lost at a high frequency.  ...  Focusing on a species with RdRP genes (a cephalochordate), we found that it does not use them for RNAi.  ...  Darryl Conte for helpful discussions and to Julie Claycomb, Kazufumi Mochizuki and Phillip D. Zamore for critical reading of the manuscript.  ... 
doi:10.1371/journal.pgen.1007915 fatcat:y25kyh3enraqlgksbqerqrmt7i