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PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies
2017
Bioinformatics
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Results: Here we present PhylOligo, a new package including tools to explore, identify and extract organism-specific sequences in a genome assembly using the analysis of their DNA compositional characteristics ...
It is therefore useful to develop software to identify mix of organisms from genome sequence assemblies. ...
, similarity to public databases and reference gene sets to identify untargeted species using both raw reads and assembled contigs of a genomic dataset. ...
doi:10.1093/bioinformatics/btx396
pmid:28637232
pmcid:PMC5860033
fatcat:nlpywadg75huze5bho4coxj7wq