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PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

Ludovic Mallet, Tristan Bitard-Feildel, Franck Cerutti, Hélène Chiapello, John Hancock
2017 Bioinformatics  
Results: Here we present PhylOligo, a new package including tools to explore, identify and extract organism-specific sequences in a genome assembly using the analysis of their DNA compositional characteristics  ...  It is therefore useful to develop software to identify mix of organisms from genome sequence assemblies.  ...  , similarity to public databases and reference gene sets to identify untargeted species using both raw reads and assembled contigs of a genomic dataset.  ... 
doi:10.1093/bioinformatics/btx396 pmid:28637232 pmcid:PMC5860033 fatcat:nlpywadg75huze5bho4coxj7wq