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PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs)

Augustin Luna, Margot L. Sunshine, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn
2011 Computer applications in the biosciences : CABIOS  
Using our open-source pathway analysis platform, PathVisio, we will bridge pathway analysis to the wealth of quantitative approaches already in development for metabolic network modeling, such as flux  ...  balance analysis and dynamic simulation.  ...  Finally, we will create a PathVisio plugin for visualizing flux data on biological pathways and for performing flux balance analysis.  ... 
doi:10.1093/bioinformatics/btr336 pmid:21636591 pmcid:PMC3137219 fatcat:rociwyyfkjddbdpdygcms2w3bu

PathVisio 3: An Extendable Pathway Analysis Toolbox

Martina Kutmon, Martijn P. van Iersel, Anwesha Bohler, Thomas Kelder, Nuno Nunes, Alexander R. Pico, Chris T. Evelo, Robert F. Murphy
2015 PLoS Computational Biology  
There are already more than 15 plugins available in the central plugin repository.  ...  PathVisio is a commonly used pathway editor, visualization and analysis software.  ...  Acknowledgments We would like to thank all plugin developers for their contributions. Thanks to WikiPathways and PathVisio user communities for their feedback and input.  ... 
doi:10.1371/journal.pcbi.1004085 pmid:25706687 pmcid:PMC4338111 fatcat:ctldvr6oozcfnaqn7dzqvqar4u