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PatchSearch: a web server for off-target protein identification

<span title="2019-07-02">2019</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Then the PatchSearch web server proposes a ligand binding mode for the potential off-target, as well as an estimated affinity calculated by the Vinardo scoring function.  ...  Thus, this web server may help to detect potential off-target protein.  ...  Nucleic Acids Research, 2019, Vol. 47, Web Server issue W367 WEB SERVER The PatchSearch web server allows a local non-sequential searching for similar regions, called patches, on the entire protein  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkz478">doi:10.1093/nar/gkz478</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31131411">pmid:31131411</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6602448/">pmcid:PMC6602448</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6bfloqv6bja5jg7ownpjsou3vq">fatcat:6bfloqv6bja5jg7ownpjsou3vq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210526033552/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6602448&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/61/55/6155961067a36f7e013a51cffb1067cf45c12944.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkz478"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602448" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

LigTMap: ligand and structure-based target identification and activity prediction for small molecular compounds

Faraz Shaikh, Hio Kuan Tai, Nirali Desai, Shirley W. I. Siu
<span title="2021-06-10">2021</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5aubiwi6v5beng6iqzj577kiaa" style="color: black;">Journal of Cheminformatics</a> </i> &nbsp;
Here, we introduce LigTMap, an online server with a fully automated workflow that can identify protein targets of chemical compounds among 17 classes of therapeutic proteins extracted from the PDBbind  ...  The LigTMap web server is freely accessible at https://cbbio.online/LigTMap.  ...  Acknowledgements The authors thank the support of the Faculty of Science and Technology and the Information and Communication Technology Office of University of Macau for providing the computing facilities  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13321-021-00523-1">doi:10.1186/s13321-021-00523-1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34112240">pmid:34112240</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hdaq2s7fb5cctkmonw4xz24r4a">fatcat:hdaq2s7fb5cctkmonw4xz24r4a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210717040307/https://jcheminf.biomedcentral.com/track/pdf/10.1186/s13321-021-00523-1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c3/f7/c3f73b6bee0fff8ad68b514a268f29f86fdb98fd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13321-021-00523-1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>