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Biological databases: A new scientific literature

Robert J. Robbins
1994 Publishing research quarterly  
Databases are taking the role of scientific literature in distributing this information to the community.  ...  Now these databases are becoming a new kind of primary literature with findings being submitted directly to the database and never being published in print form.  ...  Database Contents Should a biological database be a compilation of scientific truths, or should it be a collection of scientific observations?  ... 
doi:10.1007/bf02680434 fatcat:3pbw7y4tfnhdzlvoxoybx7i454

Toward Binding Database Interfaces with Scientific Papers

Laurent Michel, Sinan Acar, Gilles Landais, André Schaaff, S. Lesteven, B. Kern, R. D'Abrusco, B. Dorch
2018 EPJ Web of Conferences  
Despite a large variety of facilities helping to either select or manipulate data from Web interfaces, it remains difficult to provide users with relevant scientific or technical annotations for those  ...  On the top of each fragment is an anchor running the display, on the right panel, of the whole text scrolled down to the fragment location.  ...  Catalog quantities are used to both filter scientific queries and to provide additional data to the searched results.  ... 
doi:10.1051/epjconf/201818608002 fatcat:4ungdy6e6jh5hfqf6uilcgs6f4

An annotation database for multimodal scientific data

Cristina Bogdanschi, Simone Santini, Raimondo Schettini, Ramesh C. Jain, Simone Santini
2009 Multimedia Content Access: Algorithms and Systems III  
However, due to the nature of the various types of heterogeneous data and lack of local and global database structures, standard data integration approaches fail or are not applicable.  ...  In addition to the inherent complexity of scientific data management, the significant amount of scientific information that takes the form of annotations rises new data management issues. 1 Annotations  ...  database languages.  ... 
doi:10.1117/12.816744 fatcat:i3tgkkb6zjfgxk2yrjoyc6mldi

Scientific Data Management: An Orphan in the Database Community?

Randal Burns, Susan B. Davidson, Yannis Ioannidis, Miron Livny, Jignesh M. Patel
2008 2008 IEEE 24th International Conference on Data Engineering  
Increasingly, scientific discovery relies on querying vast amount of information for correlations and comparisons.  ...  Scientists in biology, astronomy, medicine, etc. are assembling databases that are commonly hundreds of terabytes.  ...  The panel assembles leading experts in the application of databases to scientific computing problems.  ... 
doi:10.1109/icde.2008.4497408 dblp:conf/icde/BurnsDILP08 fatcat:2mplh2jo6vcmzlkjgmp6dze6vy

Scientific Databases - State of the Art and Future Directions

Maria Zemankova, Yannis E. Ioannidis
1994 Very Large Data Bases Conference  
The aim of this interdisciplinary panel is to examine scientific databases achievements (or lessons learned) and explore future challenges for the database community.  ...  The pioneering projects in the area of scientific databases have shown that in order to make progress in scientific and engineering databases, the research must be driven by the needs of the discipline  ... 
dblp:conf/vldb/ZemankovaI94 fatcat:ird25nifxfbxviu2ctzfiwizsm

Scientific death-knell against databases? Errors induced by database manipulations and its consequences

Christian C. EMIG, Maria Aleksandra BITNER, Fernando ÁLVAREZ
2015 Carnets de Géologie  
The decrease of the specialists in systematics and their replacement by IT specialists question the scientific reliability of the online databases as well as the specimen labelling in museums.  ...  scientific requirements, except if verifying all the desired data.  ...  WoRMS remains the only global database to bring together a large panel of scientists who have skills to ensure the taxonomic relevance and excellence in systematics.  ... 
doi:10.4267/2042/57949 fatcat:cdyhammrnbeg3po2oxdcxwaimm

Neuroimaging Databases as a Resource for Scientific Discovery [chapter]

John Darrell Van Horn, John Wolfe, Autumn Agnoli, Jeffrey Woodward, Michael Schmitt, James Dobson, Sarene Schumacher, Bennet Vance
2005 International review of neurobiology  
Large-scale scientific databases and collaborating networks of researchers are being developed to enhance scientific interaction and promote the sharing of primary research information (Collins and Mansoura  ...  (http://www.co mmunityte chnology.org/nsf_ ci_report/ , (Blue Ribbon Advisory Panel On Cyberinfrastructure, 2003)).  ... 
doi:10.1016/s0074-7742(05)66002-3 pmid:16387200 fatcat:ismhit6o5ncy7nwozrx6xgni5u

The Historic Development of the Zooarchaeological Database OssoBook and the xBook Framework for Scientific Databases [article]

Daniel Kaltenthaler, Johannes-Y. Lohrer
2018 arXiv   pre-print
that is mainly designed for the needs of scientific data.  ...  In this technical report, we describe the historic development of the zooarchaeological database OssoBook and the resulting framework xBook, a generic infrastructure for distributed, relational data management  ...  Some of the Books are scientific databases which are publicly available, others are local databases for the inventory of findings in museums or state collections.  ... 
arXiv:1801.08052v1 fatcat:g3znrzbzcrcc5k65c2i65yti5a

Limits to database protection: Fair use and scientific research exemptions

Anselm Kamperman Sanders
2006 Research Policy  
Although scientific and genuine information databases remain unaffected, they suffer the problem that resources are hard to acquire and may sometimes be funded once only.  ...  The approach taken with regard to cultural and scientific life is therefore a multifaceted one, describing the right both in terms of access to and engagement in scientific discourse, and the protection  ... 
doi:10.1016/j.respol.2006.04.007 fatcat:usmq7bm67rhrzpghq2fjaqru7i

The General Practice Research Database. Scientific and Ethical Advisory Group

D. Lawson
1998 QJM: Quarterly journal of medicine  
We describe a powerful new information resource appropriate safeguards for patient anonymity and for scientific and ethical standards of the proposed for pharmacovigilance, pharmaco-economic studies, clinical  ...  This database has depended upon the participating general practitioners and has already which involves automated linkage of demographic, diagnostic and prescription information on some resulted in a substantial  ...  Included all access is channelled through a Scientific and Ethical Advisory Group (SEAG) (Appendix 2).  ... 
doi:10.1093/qjmed/91.6.445 pmid:9709463 fatcat:iuf7gyvmtbg2tepsqcczokvogq

Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database

Florian Malard, Eugenia Wulff-Fuentes, Rex R Berendt, Guillaume Didier, Stephanie Olivier-Van Stichelen
2021 Database: The Journal of Biological Databases and Curation  
We hope that this software model will be useful beyond the O-GlcNAc community, to set up new smart, scientific online databases, in a short period of time.  ...  We particularly emphasized our workflow, involving a mostly automatized and self-maintained database, including machine learning approaches for text mining.  ...  To conclude, we wish the O-GlcNAc database to be an example of reliable and sustainable scientific catalogue that inspire the development of many smart scientific database to come.  ... 
doi:10.1093/database/baab039 pmid:34279596 pmcid:PMC8288053 fatcat:s5p3bqsr7faj5gcy32exntb5rq

Current Research in Statistical and Scientific Databases: the V SSDBM

Zbigniew Michalewicz
1990 IEEE Data Engineering Bulletin  
This resulted in a series of conferences on statistical and scientific database management (SSDBM).  ...  Scientific and statistical databases (SSDB) have some special characteristics and requirements that cannot be supported by existing commercial database management systems.  ...  Thus, for some scientific applications, a PLC database may also serve as a local/transient part of a larger scientific database.  ... 
dblp:journals/debu/Michaelwicz90 fatcat:xpbsmxrh2zdlfh5p4cvx6n2tka

Network-based statistical comparison of citation topology of bibliographic databases

Lovro Šubelj, Dalibor Fiala, Marko Bajec
2014 Scientific Reports  
Modern bibliographic databases provide the basis for scientific research and its evaluation.  ...  This work can serve either as a reference for scholars in bibliometrics and scientometrics or a scientific evaluation guideline for governments and research agencies.  ...  Respective bibliographic or online databases are given under the www.nature.com/scientificreports SCIENTIFIC REPORTS | 4 : 6496 | DOI: 10.1038/srep06496 www.nature.com/scientificreports SCIENTIFIC  ... 
doi:10.1038/srep06496 pmid:25263231 pmcid:PMC4178292 fatcat:oqubvvmfireh3aty7faodh6brm

A solar radiation database for Chile

Alejandra Molina, Mark Falvey, Roberto Rondanelli
2017 Scientific Reports  
Here a new public database for surface solar irradiance over Chile is presented. This database includes hourly irradiance from 2004 to 2016 at 90 m horizontal resolution over continental Chile.  ...  SCientifiC REPORts | 7: 14823 | DOI:10.1038/s41598-017- Figure 4 . 4 For each one kilometer grid point, the daily average insolation of GHI (panel A) and DNI (panel B), for the period 2004 to 2016, were  ...  Black dots in panel A show the position of the ground stations used to validate the irradiance database.  ... 
doi:10.1038/s41598-017-13761-x pmid:29093511 pmcid:PMC5665918 fatcat:nzyclims3re4njlezwoit62n2u

StoneMod: a database for kidney stone modulatory proteins with experimental evidence

Supatcha Sassanarakkit, Paleerath Peerapen, Visith Thongboonkerd
2020 Scientific Reports  
Database URL:https://www.stonemod.org.  ...  Moreover, this database provides a user-friendly web interface, in which the users can freely access to the information and/or submit their data to deposit or update.  ...  detailed information page ( Fig. 5 ; panel (iv)).  ... 
doi:10.1038/s41598-020-71730-3 pmid:32934277 fatcat:4v7nwcelpvhpdcuzxglzcit4wy
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