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Fighting against uncertainty: An essential issue in bioinformatics [article]

Michiaki Hamada
2013 arXiv   pre-print
Many bioinformatics problems, such as sequence alignment, gene prediction, phylogenetic tree estimation and RNA secondary structure prediction, are often affected by the "uncertainty" of a solution; that  ...  Acknowledgement This work was supported in part by MEXT KAKENHI (Grant-in-Aid for Young Scientists (A): 24680031). I am grateful to Dr. Martin Frith, Dr. Dave duVerle and Prof.  ...  [66] have extended aligned-pairing probabilities to the case of multiple alignments: probabilistic sampling-based alignment reliability (PSAR) calculates the reliability of each column in a given multiple  ... 
arXiv:1305.3655v1 fatcat:w6z54dcdubaghmv3lsfqcncw2e

Pitfalls in supermatrix phylogenomics

Hervé Philippe, Damien M. de Vienne, Vincent Ranwez, Béatrice Roure, Denis Baurain, Frédéric Delsuc
2017 European Journal of Taxonomy  
., sequencing and annotation errors, contaminant sequences).  ...  While some then predicted "the end of incongruence", it soon appeared that analysing large amounts of sequence data without an adequate model of sequence evolution amplifies systematic error and leads  ...  Acknowledgments This work has benefi ted from support by the TULIP Laboratory of Excellence (ANR-10-LABX-41) to HP and from an "Investissements d'Avenir" grant managed by Agence Nationale de la Recherche  ... 
doi:10.5852/ejt.2017.283 fatcat:7rjabixh5bbgxhxtaqhi2jprpm

Analysis of mineralogical and deformation-induced transformations of Nizhnekansky Massif rocks to estimate their retention capacity in geological disposal and isolation of radioactive waste
Исследование минеральных и деформационных преобразований горных пород Нижнеканского массива в целях определения их удерживающей способности при геологическом захоронении и изоляции радиоактивных отходов

V. A. Petrov, V. V. Poluektov, J. R. Hammer, G. Zulauf
2015 Gornyi Zhurnal  
Acknowledgements Sandia National Laboratories is a multi-programme laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energy's National Nuclear Security  ...  Many, but not all, variance-based methods require specific and extensive sampling schemes, while Pearson and Spearman methods can be carried out based on any sample used already for probabilistic uncertainty  ...  The values for q, T, F, A and C were sampled in a probabilistic calculation and in addition a number of sensitivity calculations were performed.  ... 
doi:10.17580/gzh.2015.10.13 fatcat:yzcpa3iw7nhz5omablnvlygnum

Proceedings, MSVSCC 2012

His research interests include multi-objective decision making under uncertainty, probabilistic and non-probabilistic uncertainty analysis, critical infrastructure protection, and decision making using  ...  The research work presented here will be extended to model other types of strategies to improve the travel time of emergency response vehicles.  ...  In Figure 2 , a PSAR is communicating with the AFNs that are in its range which are in the front of the PSAR.  ... 
doi:10.25776/shm5-y339 fatcat:ol34hmymzvflpeateq4jzx46qq

La géographie de la santé Bibliographie thématique Centre de documentation de l'Irdes

Marie-Odile Safon, Véronique Suhard
2017 unpublished
PARTICIPANTS: Surveys were completed by 96 patients and 88 providers/staff. Indepth interviews were completed by 42 patients and 64 providers/staff.  ...  Abstract: Primary care is often thought of as the gateway to improved health outcomes and can lead to more efficient use of health care resources.  ...  A probabilistic sampling method (PSM) for estimating geographic distance to health services when only the region of residence is known.  ... 

Language documentation and description: a morphophonological analysis of the Thassian dialect based on fieldwork study

Νικόλαος Ι. Βογιατζής
morphosyntactic, and semantic analyses METHODOLOGICAL Sampling, reliability, naturalness Definition of terms and  ...  i.e., extended case syncretism and paradigmatic uniformity.  ... 
doi:10.26262/ fatcat:p6kv4epehne7fcixut4pyna7li