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PIPs: human protein-protein interaction prediction database

M. D. McDowall, M. S. Scott, G. J. Barton
<span title="2009-01-01">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The PIPs database provides a new resource on protein-protein interactions in human that is straightforward to browse, or can be exploited completely, for interaction network modelling.  ...  The PIPs database (http://www.compbio.dundee.ac. uk/www-pips) is a resource for studying proteinprotein interactions in human.  ...  In this article, a new database-PIPs-of predicted PPIs for human is described.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkn870">doi:10.1093/nar/gkn870</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18988626">pmid:18988626</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2686497/">pmcid:PMC2686497</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/b6nvumbzz5fzljdkyly7wvpswe">fatcat:b6nvumbzz5fzljdkyly7wvpswe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190218015149/http://pdfs.semanticscholar.org/0880/43e4949ed32f29798a8954f38e7f9059da83.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/08/80/088043e4949ed32f29798a8954f38e7f9059da83.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkn870"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686497" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The PCNA interaction motifs revisited: thinking outside the PIP-box

Andreas Prestel, Nanna Wichmann, Joao M. Martins, Riccardo Marabini, Noah Kassem, Sebastian S. Broendum, Marit Otterlei, Olaf Nielsen, Martin Willemoës, Michael Ploug, Wouter Boomsma, Birthe B. Kragelund
<span title="2019-05-27">2019</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a5zaemqj4za4nekjggicuat22q" style="color: black;">Cellular and Molecular Life Sciences (CMLS)</a> </i> &nbsp;
Its binding partners carry a short linear motif (SLiM) known as the PCNA-interacting protein-box (PIP-box), but sequence-divergent motifs have been reported to bind to the same binding pocket.  ...  Our systematic multidisciplinary approach expands current views on PCNA interactions and reveals that the PIP-box affinity can be modulated over four orders of magnitude by positive charges in the flanking  ...  Many PCNA-interacting proteins (PIPs) have a characteristic SLiM called a PIP-box [25] , or, for degradation, a PIP-degron [26] , Fig. 1c .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00018-019-03150-0">doi:10.1007/s00018-019-03150-0</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31134302">pmid:31134302</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6881253/">pmcid:PMC6881253</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pomj2i4rrvfdze4vvig4xuufxm">fatcat:pomj2i4rrvfdze4vvig4xuufxm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200311111638/https://link.springer.com/content/pdf/10.1007%2Fs00018-019-03150-0.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c3/11/c31132bb99f601005d313e79465271905514a81b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00018-019-03150-0"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6881253" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

PTPs emerge as PIPs: protein tyrosine phosphatases with lipid-phosphatase activities in human disease

R. Pulido, A. W. Stoker, W. J. A. J. Hendriks
<span title="2013-07-29">2013</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/b6edj2e2zzf77igiepykq3vzii" style="color: black;">Human Molecular Genetics</a> </i> &nbsp;
Recent findings have unveiled that the biological activity of PTPs goes beyond the dephosphorylation of phospho-proteins to shut down protein tyrosine kinase-driven signaling cascades.  ...  Consequently, PTPs have emerged as novel potential therapeutic targets for human diseases, including cancer predispositions, myopathies and neuropathies.  ...  Interestingly, in a human ciliopathy disease protein-interaction network it is myosin isoform VIIA that, like PTPRQ, associated with deafness phenotypes (16) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/hmg/ddt347">doi:10.1093/hmg/ddt347</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23900072">pmid:23900072</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/t32jlwot4bh5pctym3k6az3tge">fatcat:t32jlwot4bh5pctym3k6az3tge</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190225100843/http://pdfs.semanticscholar.org/5e1d/698398ff4c45fb2f7531996d6e5cc2a345f6.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5e/1d/5e1d698398ff4c45fb2f7531996d6e5cc2a345f6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/hmg/ddt347"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

A Functional and Regulatory Network Associated with PIP Expression in Human Breast Cancer

Marie-Anne Debily, Sandrine El Marhomy, Virginie Boulanger, Eric Eveno, Régine Mariage-Samson, Alessandra Camarca, Charles Auffray, Dominique Piatier-Tonneau, Sandrine Imbeaud, Alfredo Herrera-Estrella
<span title="2009-03-05">2009</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
The PIP (prolactin-inducible protein) gene has been shown to be expressed in breast cancers, with contradictory results concerning its implication.  ...  Functional and regulatory network analyses based on a knowledge database revealed a master network of PIP co-modulated genes, including many interconnecting oncogenes and tumor suppressor genes, half of  ...  This interaction between PIP and FN1 is actually missing in the IPA database.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0004696">doi:10.1371/journal.pone.0004696</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19262752">pmid:19262752</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2650800/">pmcid:PMC2650800</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xgtchdmmmvdw7ng3dlwvosz5ji">fatcat:xgtchdmmmvdw7ng3dlwvosz5ji</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170923113959/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0004696&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/55/e2/55e25331d046a830384b01c4a6bcba34928664ea.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0004696"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650800" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Suppression of OSCC malignancy by oral glands derived-PIP identified by iTRAQ combined with 2D LC-MS/MS

Qibo Wang, Yuan Zhi, Wenhao Ren, Shaoming Li, Zhichao Dou, Xiaoming Xing, Xinyu Quan, Yuting Wang, Chunmiao Jiang, Xiao Liang, Ling Gao, Keqian Zhi
<span title="2019-01-28">2019</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/i3t3q5unuzdkbhyko2ovoixch4" style="color: black;">Journal of Cellular Physiology</a> </i> &nbsp;
Of the DEPs detected, the most significantly downregulated protein in OSCC tissue was prolactin-inducible protein (PIP).  ...  In western blot analysis, silencing studies confirmed that PIP mediates these effects through the AKT/mitogen-activated protein kinase (MAPK) signaling axis in OSCC cells.  ...  ) database and reconstructed through the addition of recently identified PIP interacting proteins  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/jcp.28180">doi:10.1002/jcp.28180</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30693510">pmid:30693510</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6590427/">pmcid:PMC6590427</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2z6zf4jfijcapnxw3uhevycaay">fatcat:2z6zf4jfijcapnxw3uhevycaay</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200509034623/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6590427&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b3/61/b3618df8d7528d1ed60e84397a53d04ce2dd1322.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/jcp.28180"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> wiley.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6590427" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A novel interferon regulatory factor family transcription factor, ICSAT/Pip/LSIRF, that negatively regulates the activity of interferon-regulated genes

T Yamagata, J Nishida, S Tanaka, R Sakai, K Mitani, M Yoshida, T Taniguchi, Y Yazaki, H Hirai
<span title="">1996</span> <i title="American Society for Microbiology"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ki5pr2lmenbmbijbb4tkftguwe" style="color: black;">Molecular and Cellular Biology</a> </i> &nbsp;
recently cloned Pip/LSIRF.  ...  We have isolated a novel cDNA clone encoding interferon (IFN) consensus sequence-binding protein in adult T-cell leukemia cell line or activated T cells (ICSAT); this protein is the human homolog of the  ...  When an interaction partner protein, like PU.1, is present, the newly formed Pip/PU.1 complex exerts transactivational effect.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1128/mcb.16.4.1283">doi:10.1128/mcb.16.4.1283</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/8657101">pmid:8657101</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC231112/">pmcid:PMC231112</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fq2tvx2kz5dkhfftvmx66hgrqm">fatcat:fq2tvx2kz5dkhfftvmx66hgrqm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200309200514/https://mcb.asm.org/content/mcb/16/4/1283.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/13/6f/136fca946644782e14dc60cfac6a705c1798cc3c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1128/mcb.16.4.1283"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> asm.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC231112" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The future of information under the CBD, Nagoya Protocol, Plant Treaty, and PIP Framework

Charles Lawson, Fran Humphries, Michelle Rourke
<span title="2019-03-14">2019</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/phsvkxfwovhy7jzgl2re5q6gdq" style="color: black;">Journal of World Intellectual Property</a> </i> &nbsp;
of the virus, predicting vaccine efficacy based on viral evolution models founded on GSD, and so on (PIP TEWG, 2014, p. 5).  ...  And under the PIP Framework "PIP biological materials" includes "human clinical specimens, virus isolates of wild type human H5N1 and other influenza viruses with human pandemic potential; and modified  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/jwip.12118">doi:10.1111/jwip.12118</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/m4kg7xylujfyrgogw4hmk7qyqi">fatcat:m4kg7xylujfyrgogw4hmk7qyqi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200508193213/https://research-repository.griffith.edu.au/bitstream/handle/10072/384111/Lawson210810.pdf;jsessionid=3AB10060A6FDCF885E60A98EEDEB1D97?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d2/dd/d2dd9e9b256018be83d43d85a1c4cebcaade94b1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/jwip.12118"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Human protein-protein interaction prediction

Mark D McDowall, Michelle S Scott, Geoffrey J Barton
<span title="">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
In the scientific literature and large public databases there are currently only~39000 human protein-protein interactions that have been experimentally confirmed out of a potential 330,000,000 (assuming  ...  All predicted protein-protein interactions are returned ranked by their likelihood of interaction.  ...  Background In the scientific literature and large public databases there are currently only~39000 human protein-protein interactions that have been experimentally confirmed out of a potential 330,000,000  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-11-s10-p1">doi:10.1186/1471-2105-11-s10-p1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/arpoygujszarvghk2j4t7cgkhi">fatcat:arpoygujszarvghk2j4t7cgkhi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170819014427/https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-11-S10-P1?site=bmcbioinformatics.biomedcentral.com" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/12/c1/12c1802705435583f6b304500538c3c1c506909a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-11-s10-p1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

Inter-species validation for domain combination based protein-protein interaction prediction method

Woo-Hyuk Jang, Dong-Soo Han, Hong-Soog Kim, Sung-Doke Lee
<span title="">2005</span> <i title="Universal Academy Press Inc"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jf2bmhtlzjh4zjrkh3rivxd2sq" style="color: black;">Genome Informatics Series</a> </i> &nbsp;
Interactions of proteins in Human, Mouse, H. pylori, E. coli, and C. elegans are predicted and validated using the protein interaction and domain data in Yeast, Fly, and the combination of Yeast and Fly  ...  Domain Combination based Protein-Protein Interaction Prediction (DCPPIP) method is revealed to show outstanding prediction accuracy in Yeast proteins.  ...  Human Protein Reference Database (HPRD) [14] is mainly used instead for interaction data for Human proteins in our validation test.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16901097">pmid:16901097</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/457vk3fpyze7ng66oji63dmti4">fatcat:457vk3fpyze7ng66oji63dmti4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809055016/http://www.jsbi.org/pdfs/journal1/GIW05/GIW05F008.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9c/5a/9c5ad3e0c938f4d3271f0d9b8caab502ff4e29af.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

Inter-Species Validation for Domain Combination Based Protein-Protein Interaction Prediction Method

Woo-Hyuk Jang, Dong-Soo Han, Hong-Soog Kim, Sung-Doke Lee
<span title="">2005</span> <i title="Japanese Society for Bioinformatics"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jf2bmhtlzjh4zjrkh3rivxd2sq" style="color: black;">Genome Informatics Series</a> </i> &nbsp;
Interactions of proteins in Human, Mouse, H. pylori, E. coli, and C. elegans are predicted and validated using the protein interaction and domain data in Yeast, Fly, and the combination of Yeast and Fly  ...  Domain Combination based Protein-Protein Interaction Prediction (DCPPIP) method is revealed to show outstanding prediction accuracy in Yeast proteins.  ...  Human Protein Reference Database (HPRD) [14] is mainly used instead for interaction data for Human proteins in our validation test.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11234/gi1990.16.2_136">doi:10.11234/gi1990.16.2_136</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2xtiggmie5e2vg6msuh27avpii">fatcat:2xtiggmie5e2vg6msuh27avpii</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220507124521/https://www.jstage.jst.go.jp/article/gi1990/16/2/16_2_136/_pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ea/85/ea8579115092932c1e8e3c347789a0f126982773.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11234/gi1990.16.2_136"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

The Potential Mechanism of ZFX Involvement in the Cell Growth

Mahboube Ganji arjenaki, Parvaneh Nikpour, Mojtaba Emadi-bygi
<span title="2016-04-01">2016</span> <i title="CASRP: Center of Advanced Scientific Research and Publications"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/opcpgdjgrnfzjigncjg672qzgq" style="color: black;">Research in Molecular Medicine</a> </i> &nbsp;
Materials and Methods: The PIPs output includes three interacting proteins with ZFX: eukaryotic translation initiation factor 3 subunit I (EIF3I), eukaryotic translation initiation factor 3 subunit G (  ...  The aim of this study is to define ZFX protein-protein interactions and the role of ZFX in cell growth.  ...  We searched PIPs (human protein-protein interaction prediction database) to find ZFX interacting proteins (18) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.18869/acadpub.rmm.4.2.24">doi:10.18869/acadpub.rmm.4.2.24</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/yj72bh7lqnd35iauvulqgbfyny">fatcat:yj72bh7lqnd35iauvulqgbfyny</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180721115201/http://rmm.mazums.ac.ir/files/site1/user_files_a6894a/mahboube-A-10-795-2-5a75959.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/66/d9/66d9710abf0e6160a386bfc764adecdb599afd7a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.18869/acadpub.rmm.4.2.24"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

PreSPI: design and implementation of protein-protein interaction prediction service system

Dong-Soo Han, Hong-Soog Kim, Woo-Hyuk Jang, Sung-Doke Lee, Jung Keun Suh
<span title="">2004</span> <i title="Universal Academy Press Inc"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jf2bmhtlzjh4zjrkh3rivxd2sq" style="color: black;">Genome Informatics Series</a> </i> &nbsp;
With the recognition of the importance of computational approach for protein-protein interaction prediction, many techniques have been developed to computationally predict protein-protein interactions.  ...  accuracy to other conventional computational protein-protein interaction prediction methods.  ...  Using the two PIP distributions, for an unknown protein pair, its PIP value is computed and the interaction possibility of the protein pair is predicted by deciding to which distribution the PIP value  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15706503">pmid:15706503</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5nsavugofneo3ihgpwik7roblq">fatcat:5nsavugofneo3ihgpwik7roblq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809054723/http://www.jsbi.org/pdfs/journal1/GIW04/GIW04F018.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ae/d7/aed7bf68d6a6e305a8ab67a3732e0028dfcd7780.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

Protein Phosphatase 1α Interacting Proteins in the Human Brain

Sara L.C. Esteves, Sara C. Domingues, Odete A.B. da Cruz e Silva, Margarida Fardilha, Edgar F. da Cruz e Silva
<span title="">2012</span> <i title="Mary Ann Liebert Inc"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zlgxgb5uazdqdfh5i5hk25cjge" style="color: black;">Omics</a> </i> &nbsp;
A large protein interaction databases search was also performed to integrate with the results of the PP1α Human Brain Yeast Two-Hybrid and a total of 246 interactions were retrieved.  ...  Protein Phosphatase 1 (PP1) is a major serine/threonine-phosphatase whose activity is dependent on its binding to regulatory subunits known as PP1 interacting proteins (PIPs), responsible for targeting  ...  Eight protein-protein interaction databases were searched for PP1a interactions; only human proteins were considered in this study (Appendix 2).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1089/omi.2011.0041">doi:10.1089/omi.2011.0041</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22321011">pmid:22321011</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3275796/">pmcid:PMC3275796</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/m5fluqbqgffkjdq2gkk3pv5nme">fatcat:m5fluqbqgffkjdq2gkk3pv5nme</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200206090229/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3275796&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/41/fc/41fcc5e832cf853dad2be859eb8fb31635943006.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1089/omi.2011.0041"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3275796" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

PreSPI: a domain combination based prediction system for protein-protein interaction

D.-S. Han
<span title="2004-11-29">2004</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
When 80% of the set of interacting protein pairs in the DIP (Database of Interacting Proteins) was used as a learning set of interacting protein pairs, high sensitivity (77%) and specificity (95%) were  ...  The validity of the prediction model was evaluated using an interacting set of protein pairs in yeast and an artificially generated non-interacting set of protein pairs.  ...  ACKNOWLEDGEMENTS We are grateful to Ms Hang-Yi Kim for her pioneering work on protein interaction study in early stages of this research.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkh972">doi:10.1093/nar/gkh972</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15576357">pmid:15576357</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC535680/">pmcid:PMC535680</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xjepj7w2nfev5jhgkkm7ckizuy">fatcat:xjepj7w2nfev5jhgkkm7ckizuy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180728073710/https://watermark.silverchair.com/gkh972.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAaAwggGcBgkqhkiG9w0BBwagggGNMIIBiQIBADCCAYIGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM0umcNq_keNjmoip4AgEQgIIBU6ndyyKfVQC3zeesgXmak9AoZ7zW71I7EsA-oqDePdmKWv0EMV75zAmxQJN1ztyxYDdevOUM8UWHD9Y1pRb-jmpzYBzSzG52ZuR_1a8Dv9WzHF-uV05UekPiGBtW4qymBRaGvTvujs8tXbhnLkMCtTOZC7o4XP9qqfLraGyATJh6GEAfD9wC3_TGHkjl9nr72699wTwjRLjBtCcA-8j46DVJ9duTPw7Rnkgtw9qMpShKsfg6PiiOmOTEU9C9ViV_xfhLUoKCJO6gUe6NsB_xCtZ4bmDlbhkMokskuNEO1etnLJ15sNotYNhwLUH_OGet3V8OECQbgru664caZwdHd4otGA3UziXO77upbvqzEtlWrTn40qdybryqiG25li1hg4h1klKek3z6aG1LBFjsiV8WxCEH5W_yUpasqy9zIHjEMwOnzmIZg6wHM5WvU3Bnyu2wEQ" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f7/8d/f78d1e8242705ad06d03c8a4f7d3efa67ea6c1e6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkh972"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC535680" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Regulation of the Phosphoinositide Code by Phosphorylation of Membrane Readers

Troy A. Kervin, Michael Overduin
<span title="2021-05-14">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3iichab3fbz7jq46o55l6trkq" style="color: black;">Cells</a> </i> &nbsp;
and phosphoproteomic databases.  ...  These PIP-stops control the selective targeting of proteins to organelles and are shown to be key determinants of high-fidelity PIP recognition.  ...  The total number of occurrences of each human kinase which is predicted by NetworKIN and NetPhorest [105] to phosphorylate the candidate PIP-stops identified here in all human PX domains are shown.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/cells10051205">doi:10.3390/cells10051205</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34069055">pmid:34069055</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mgppayffqbb4rgaa3ccs3vpz7y">fatcat:mgppayffqbb4rgaa3ccs3vpz7y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210515060719/https://res.mdpi.com/d_attachment/cells/cells-10-01205/article_deploy/cells-10-01205.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c3/50/c35066897de1c5469b82d553aa3f2893a0c73472.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/cells10051205"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>
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