A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Filters
PDBe: Protein Data Bank in Europe
2013
Nucleic Acids Research
Preserved Fulltext
The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination ...
PDBe also develops tools that help the biomedical science community to make effective use of the data in the PDB and EMDB for their research. ...
ACKNOWLEDGEMENTS The authors would like to thank all collaborators and partners in the EBI, EMBL, wwPDB, EMDataBank, BioMagResBank, CCPN, CCP4, CCDC and other collaborative efforts. ...
doi:10.1093/nar/gkt1180
pmid:24288376
pmcid:PMC3965016
fatcat:rv2cpebl5ffzbdppo654oahfly
PDBe: Protein Data Bank in Europe
2010
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe (PDBe; pdbe.org) is actively involved in managing the international archive of biomacromolecular structure data as one of the partners in the Worldwide Protein Data Bank ...
PDBe also develops new tools to make structural data more widely and more easily available to the biomedical community. ...
depositing their structures and experimental data in the PDB and EMDB. ...
doi:10.1093/nar/gkq985
pmid:21045060
pmcid:PMC3013808
fatcat:732ckrjoq5afnk3jt2i7jwjcvy
PDBe: Protein Data Bank in Europe
2011
Nucleic Acids Research
Preserved Fulltext
The Internet Archive has a preservation copy of this work in our general collections.
The file type is application/pdf.
The Protein Data Bank in Europe (PDBe; pdbe.org) is a partner in the Worldwide PDB organization (wwPDB; wwpdb.org) and as such actively involved in managing the single global archive of biomacromolecular ...
In addition, PDBe develops tools, services and resources to make structure-related data more accessible to the biomedical community. ...
for depositing its structures and experimental data in the PDB, BMRB and EMDB. ...
doi:10.1093/nar/gkr998
pmid:22110033
pmcid:PMC3245096
fatcat:q5b4mmkggbepdebpme7koi7hye
PDBe: Protein Data Bank in Europe
2009
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe (PDBe) (http://www .ebi.ac.uk/pdbe/) is actively working with its Worldwide Protein Data Bank partners to enhance the quality and consistency of the international archive ...
of bio-macromolecular structure data, the Protein Data Bank (PDB). ...
ACKNOWLEDGEMENTS We wish to thank all collaborators and partners in the EBI, EMBL, wwPDB and other collaborative efforts, as ...
doi:10.1093/nar/gkp916
pmid:19858099
pmcid:PMC2808887
fatcat:amgz3equ6jgenhym77vbghy47e
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
2017
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe (PDBe, pdbe.org) is actively engaged in the deposition, annotation, remediation, enrichment and dissemination of macromolecular structure data. ...
This paper describes new developments and improvements at PDBe addressing three challenging areas: data enrichment, data dissemination and functional reusability. ...
The Protein Data Bank in Europe (PDBe; pdbe.org; (2) ) is a founding member of the Worldwide Protein Data Bank (wwPDB; http://wwpdb.org (3)), the inter-national consortium that manages the PDB archive ...
doi:10.1093/nar/gkx1070
pmid:29126160
pmcid:PMC5753225
fatcat:j6ocp5cauvau3d7jd4gw3htwiq
The Protein Data Bank in Europe (PDBe): bringing structure to biology
2011
Acta Crystallographica Section D: Biological Crystallography
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Introduction The Protein Data Bank in Europe (PDBe; http://pdbe.org; Velankar et al., 2010 Velankar et al., , 2011 , previously known as the European Macromolecular Structure Database (MSD; Velankar ...
et al., 2005; Tagari et al., 2006) , is the European partner in the Worldwide Protein Data Bank (wwPDB; http:// wwpdb.org; Berman et al., 2007) . ...
doi:10.1107/s090744491004117x
pmid:21460450
pmcid:PMC3069747
fatcat:gpse5hxwwvbyxbqhrrsodahkye
Enhancing small-molecule information in the Protein Data Bank in Europe
2019
Acta Crystallographica Section A: Foundations and Advances
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
As part of the data enrichment process in the Protein Data Bank in Europe [1] we have extended small molecule information to include scaffolds, fragments, physicochemical properties, and 2D coordinates ...
Interaction information between macromolecules and small molecules is already available through the new aggregated views for proteins [2] which are part of the Protein Data Bank in Europe Knowledge Base ...
As part of the data enrichment process in the Protein Data Bank in Europe [1] we have extended small molecule information to include scaffolds, fragments, physicochemical properties, and 2D coordinates ...
doi:10.1107/s2053273319093707
fatcat:juao2qiysndzffkqkeop3lpwmu
PDBe – bringing structure to biology
2012
Acta Crystallographica Section A Foundations of Crystallography
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
in the gas phase. ...
In both cases, though, both BP and CB can adopt higher-energy planar conformations in some crystal structures. ...
EMBL-EBI's Protein Data Bank in Europe (PDBe; pdbe.org) [1, 2] , one of the founders of the Worldwide Protein Data Bank (wwPDB; wwpdb.org), is committed to becoming such a resource. ...
doi:10.1107/s0108767312098285
fatcat:r6cmjcrq3vgxfoboyzfigctdsy
PDBe: bringing structure to biology and beyond
2017
Acta Crystallographica Section A: Foundations and Advances
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Protein Data Bank in Europe (PDBe) [1] a founder member of the wwPDB, has a mission to bring structure to biology. ...
In conjunction with Europe PMC [3], PDBe is able to display figures and legends from open-access publications describing PDB entries and datamine literature for instances of PDB codes. ...
Protein Data Bank in Europe (PDBe) [1] a founder member of the wwPDB, has a mission to bring structure to biology. ...
doi:10.1107/s2053273317089963
fatcat:q2gizjtqcvbilftnqj7ikiozcq
PDBe: improved findability of macromolecular structure data in the PDB
2019
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe (PDBe), a founding member of the Worldwide Protein Data Bank (wwPDB), actively participates in the deposition, curation, validation, archiving and dissemination of macromolecular ...
PDBe supports diverse research communities in their use of macromolecular structures by enriching the PDB data and by providing advanced tools and services for effective data access, visualization and ...
INTRODUCTION Protein Data Bank in Europe (PDBe; pdbe.org) is a founding member of the Worldwide Protein Data Bank (ww-PDB; wwpdb.org) (1), the international consortium responsible for the management of ...
doi:10.1093/nar/gkz990
pmid:31691821
pmcid:PMC7145656
fatcat:vi6couzcmrbzfkt4gml4o2zyiq
PDBe-KB: a community-driven resource for structural and functional annotations
2021
Acta Crystallographica Section A: Foundations and Advances
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2022; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe -Knowledge Base (PDBe-KB, https://pdbe-kb.org) is a community-driven, collaborative data resource that provides literature-derived, curated and predicted structural and ...
functional annotations of molecular structure data [1]. ...
/pdbe-kb/protein/P0DTC2). ...
doi:10.1107/s0108767321090024
fatcat:j3onl6osbzbgbawaid5m7ggftu
PDBe-KB: a community-driven resource for structural and functional annotations
2019
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe-Knowledge Base (PDBe-KB, https://pdbe-kb.org) is a community-driven, collaborative resource for literature-derived, manually curated and computationally predicted structural ...
and functional annotations of macromolecular structure data, contained in the Protein Data Bank (PDB). ...
ACKNOWLEDGEMENTS We would like to thank all the members of PDBe team for their continued support of the design and development of PDBe-KB. ...
doi:10.1093/nar/gkz853
pmid:31584092
pmcid:PMC6943075
fatcat:lbpb4ss3ynaetnusqksvrbjy6y
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB
2015
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe (http://pdbe.org) accepts and annotates depositions of macromolecular structure data in the PDB and EMDB archives and enriches, integrates and disseminates structural information ...
A PDBe RESTful API has been developed to provide unified access to macromolecular structure data available in the PDB and EMDB archives as well as value-added annotations, e.g. regarding structure quality ...
INTRODUCTION The Protein Data Bank in Europe (PDBe; http://pdbe.org; 1) is actively involved in managing three core archives in molecular and cellular structural biology. ...
doi:10.1093/nar/gkv1047
pmid:26476444
pmcid:PMC4702783
fatcat:sqjtb2p3drbjncdycqrfr3m2lm
Straightforward and complete deposition of NMR data to the PDBe
2010
Journal of Biomolecular NMR
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
In full CCPN projects created with ECI, it is straightforward to select chemical shift lists, restraint data sets, structural ensembles and all relevant associated experimental collection details, which ...
After further data entry and checking with the ECI, the project can then be rapidly deposited to the PDBe using AutoDep, or exported as a complete deposition NMR-STAR file. ...
Open Access This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided ...
doi:10.1007/s10858-010-9439-3
pmid:20680401
pmcid:PMC2950272
fatcat:dwh4dfnbavfvdgsnvgp3pemj34
PDBe-KB: collaboratively defining the biological context of structural data
2021
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2022; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank in Europe - Knowledge Base (PDBe-KB, https://pdbe-kb.org) is an open collaboration between world-leading specialist data resources contributing functional and biophysical annotations ...
derived from or relevant to the Protein Data Bank (PDB). ...
In addition, we thank the consortium members and the users of PDBe-KB, who continuously provide suggestions and feedback on how to improve our services. ...
doi:10.1093/nar/gkab988
pmid:34755867
pmcid:PMC8728252
fatcat:fsl366s2jfdobge6gvqctu4zva
« Previous
Showing results 1 — 15 out of 341 results