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Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles

Zakhar Sergeevich Mustafin, Sergey Alexandrovich Lashin, Yury Georgievich Matushkin, Konstantin Vladimirovich Gunbin, Dmitry Arkadievich Afonnikov
2017 BMC Bioinformatics  
We have developed a new Cytoscape 3.0 application Orthoscape aimed to facilitate evolutionary analysis of gene networks and visualize the results.  ...  Results: Orthoscape aids in analysis of evolutionary information available for gene sets and networks by highlighting: (1) the orthology relationships between genes; (2) the evolutionary origin of gene  ...  Acknowledgements The authors would like to thank Professor Ivo Grosse for fruitful discussions and advises on the study.  ... 
doi:10.1186/s12859-016-1427-5 pmid:28466792 fatcat:lcuw77tjxfdo5hbfcf65gettda

myTAI: evolutionary transcriptomics with R

Hajk-Georg Drost, Alexander Gabel, Jialin Liu, Marcel Quint, Ivo Grosse, Ziv Bar-Joseph
2017 Bioinformatics  
: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles (implemented by Mustafin et al., 2017) • RecBlast: Cloud-Based Large Scale Orthology  ...  et al., 2016: use a gene age consensus approach to estimating gene ages for model organisms • orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and  ... 
doi:10.1093/bioinformatics/btx835 pmid:29309527 pmcid:PMC5925770 fatcat:a7yicmgbnbhj7cqcfgpw6jztai

Филотранскриптомный анализ генных сетей сахарного диабета 2 типа

2021 Plant Genetics, Genomics, Bioinformatics and Biotechnology (PlantGen School 2021) : Young Scientists School   unpublished
Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles. BMC Bioinform. 2017;18(S1):1-9.  ...  С помощью Orthoscape, приложения Cytoscape, были получены оценки уровня генетической изменчивости и эволюционного возраста исследуемых генов [3] .  ...  С помощью Orthoscape, приложения Cytoscape, были получены оценки уровня генетической изменчивости и эволюционного возраста исследуемых генов [3] .  ... 
doi:10.18699/sbb-plantgen-2021-31 fatcat:xb3x45vsnvefjekb4ya5dalupi