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Flexible data integration and ontology-based data access to medical records

Lucas Zamboulis, Alexandra Poulovassilis, George Roussos
2008 2008 8th IEEE International Conference on BioInformatics and BioEngineering  
We focus on data cleansing issues, on data integration issues related to integrating relational medical data sources into an independent domain ontology and also on query processing.  ...  The ASSIST project aims to facilitate cervical cancer research by integrating medical records containing both phenotypic and genotypic data, and residing in different medical centres or hospitals.  ...  Integration Strategy The ASSIST ontology aims to be a domain ontology, rather just an ontology interface to the current data sources, since these may be extended and their number may increase.  ... 
doi:10.1109/bibe.2008.4696774 dblp:conf/bibe/ZamboulisPR08 fatcat:u6iqzfv7fzeojo76rnhv3fojjq

Using Ontologies to Integrate Multiple Enterprise Architecture Domains [chapter]

Gonçalo Antunes, Artur Caetano, Marzieh Bakhshandeh, Rudolf Mayer, José Borbinha
2013 Lecture Notes in Business Information Processing  
This paper proposes using ontologies to specify different enterprise architecture domains and to integrate and analyse these models.  ...  The demonstration shows that the architecture domains can be integrated and analysed through the use of ontologies.  ...  -Transformation: manages the algorithms that transform sensor raw data into information. -Observation: manages geodetic data, visual inspections data, and the data acquired from monitoring systems.  ... 
doi:10.1007/978-3-642-41687-3_8 fatcat:ao5nsyiphrdp7ltpstuoyvc2r4

Managing the mappings between domain ontologies and database schemas when formulating relational queries

Kamran Munir, Mohammed Odeh, Richard McClatchey
2009 Proceedings of the 2009 International Database Engineering & Applications Symposium on - IDEAS '09  
ACKNOWLEDGMENTS The authors would like to acknowledge the support of the European Union in funding this work and the valuable assistance of all partners in the Health-e-Child project, with special thanks  ...  to colleagues working for University of the West of England (UWE) at Center for European Organization for Nuclear Research (CERN), Geneva and colleagues at UWE.  ...  to access the HeC Integrated Data Model (IDM) [7] .  ... 
doi:10.1145/1620432.1620446 dblp:conf/ideas/MunirOM09 fatcat:z3dcrsv2bfh6fjqr5u2y43ecay

Knowledge extraction from web-based application source code: An approach to database reverse engineering for ontology development

Shuxin Zhao, Elizabeth Chang, Tharam Dillon
2008 2008 IEEE International Conference on Information Reuse and Integration  
A knowledge processing and integration model for extracting and integrating the knowledge embedded in the source code for ontology development is then proposed.  ...  This paper presents a novel approach for extracting knowledge from web-based application source code in supplementing and assisting ontology development from database schemas.  ...  structure for the purpose of assisting ontology learning from databases; Section 4 presents our approach for extracting domain knowledge from application source code and then integrating the knowledge  ... 
doi:10.1109/iri.2008.4583022 dblp:conf/iri/ZhaoCD08 fatcat:r7ltbqqqfzhexdpz2fvhmvk7gi

An example of the ESTEST approach to combining unstructured text and structured data

D. Williams, A. Poulovassilis
2004 Proceedings. 15th International Workshop on Database and Expert Systems Applications, 2004.  
In this paper, we demonstrate the use of the ESTEST system, which combines the data integration approach with techniques from Information Extraction in order to allow information from ontologies and natural  ...  language sources to be integrated with other, semantically related, structured or semi-structured data.  ...  ESTEST uses related schema and ontology information to assist the IE process from text. The information extracted is integrated as a new data source with respect to a virtual global schema.  ... 
doi:10.1109/dexa.2004.1333472 dblp:conf/dexaw/WilliamsP04 fatcat:dbzg5hu2xfgk7nveddfac7s6gq

A Novel Approach for Semantic Integration of Data using Ontology

Ghonia Pooja Mansukhlal, C. Malathy, U. Uma Pratheebha
2016 Indian Journal of Science and Technology  
Findings: In this work a survey was made for integrating databases using ontology and a new approach for integration of databases is devised for finding correspondence between ontologies.  ...  Applications: View and Search functionality was provided by filtering data from Meta data. This provides easy access to the integrated data.  ...  In data source layer, OLAP can assist in taking accurate semantics of source. In the integration layer, OLAP is worn to identify transformations and confine information extraction.  ... 
doi:10.17485/ijst/2016/v9i48/102082 fatcat:4pimp5jfcvhrdipc66mchhfxly

Creating Visualizations through Ontology Mapping

Sean M. Falconer, R. Ian Bull, Lars Grammel, Margaret-Anne Storey
2009 2009 International Conference on Complex, Intelligent and Software Intensive Systems  
We combine technologies from the disciplines of software modeling and ontology engineering.  ...  After this transformation, a visualization of the domain instance data is generated.  ...  These visualizations are meant to assist scientists with exploring and understanding their data.  ... 
doi:10.1109/cisis.2009.40 dblp:conf/cisis/FalconerBGS09 fatcat:rjfdds5fancapltadz3ijp5sza

Semantic Mediation to Improve Reproducibility for Biomolecular NMR Analysis [chapter]

Michael R. Gryk, Bertram Ludäscher
2018 Lecture Notes in Computer Science  
for data transformation and analysis.  ...  Building from a core ontology representing the primary observational data of NMR, the linked data approach allows for the translation of metadata in order to configure alternate software approaches for  ...  The software-specific ontologies described in this paper are a similar approach to data integration and reproducibility as proposed by Rijgersbert, et al. with the ontology of units of measure [14] .  ... 
doi:10.1007/978-3-319-78105-1_70 pmid:30334020 pmcid:PMC6186436 fatcat:p7r6t45njvfmvnvkcsr7ekwode

Semantic Integration of Business Applications across Collaborative Value Networks [chapter]

Athanasios Bouras, Panagiotis Gouvas, Dimitrios Kourtesis, Gregoris Mentzas
2007 Establishing the Foundation of Collaborative Networks  
In this paper, we propose the Entelprise Interoperabi/ity Ontologl' (ENID) that provides a shared. common understanding of data, services and processes within B2B integration scenarios.  ...  If we try to increase the level of automation in Business-to-Business (B2B) Enterprise Application Integration (EAI) scenarios, we confront challenges related to the resolution of data heterogeneities,  ...  None of these efforts, however, provides an integrated approach and a standardsbased ontology to address dynamic data mediation and to facilitate service discovery and composition for business integration  ... 
doi:10.1007/978-0-387-73798-0_58 dblp:conf/ifip5-5/BourasGKM07 fatcat:k52de66hgzguza4pbefcjfsscm

ENIO: An Enterprise Application Integration Ontology

Athanasios Bouras, Panagiotis Gouvas, Gregoris Mentzas
2007 18th International Conference on Database and Expert Systems Applications (DEXA 2007)  
In this paper, we propose the Enterprise Interoperability Ontology (ENIO) that provides a shared, common understanding of data, services and processes within enterprise application integration scenarios  ...  If we try to increase the level of automation in Enterprise Application Integration (EAI) scenarios, we confront challenges related to the resolution of data heterogeneities, service discovery and process  ...  None of these efforts, however, provides an integrated approach and a standards-based ontology to address dynamic data mediation and to facilitate service discovery and composition for business integration  ... 
doi:10.1109/dexa.2007.25 dblp:conf/dexaw/BourasGM07 fatcat:r5pdk2abhjcwvd2h3pspihj5m4

ENIO: An Enterprise Application Integration Ontology

Athanasios Bouras, Panagiotis Gouvas, Gregoris Mentzas
2007 Database and Expert Systems Applications  
In this paper, we propose the Enterprise Interoperability Ontology (ENIO) that provides a shared, common understanding of data, services and processes within enterprise application integration scenarios  ...  If we try to increase the level of automation in Enterprise Application Integration (EAI) scenarios, we confront challenges related to the resolution of data heterogeneities, service discovery and process  ...  None of these efforts, however, provides an integrated approach and a standards-based ontology to address dynamic data mediation and to facilitate service discovery and composition for business integration  ... 
doi:10.1109/dexa.2007.4312928 fatcat:egwnol34brfarhryczms2acpmi

Integrating Software Repository Mining: A Decision Support Centered Approach

Luiz Dourado Dias Junior
2012 International Journal of Software Engineering & Applications  
Some noticeable research in this sense is related to the approximation between MSR and semantic web, specially linked data approaches which makes it possible to integrate repositories and mined results  ...  to be integrated to the tools as assistance to activity performers, as a kind of decision making support.  ...  ACKNOWLEDGEMENTS The authors would like to thank Spider project team by providing the context where the proof of concept should be performed and analysed.  ... 
doi:10.5121/ijsea.2012.3605 fatcat:rg6gmbtav5e3lojehzvqqdjnoq

Using Assertion Capabilities of an OWL-Based Ontology for Query Formulation

Kamran Munir, Mohammed Odeh, Peter Bloodsworth, Richard McClatchey
2008 2008 3rd International Conference on Information and Communication Technologies: From Theory to Applications  
The emphasis here is on exploiting the semantic relationships and assertion capabilities of OWL ontologies to assist clinicians in writing complex queries.  ...  data sources.  ...  However, this relational schema to ontology transformation is different in the sense that relational data are not transformed and then stored as ontology instances.  ... 
doi:10.1109/ictta.2008.4530296 fatcat:v4tgi5lqevbjjpxdnearefjcsi

Natural language processing for MediaWiki

Bahar Sateli, René Witte
2012 Proceedings of the Eighth Annual International Symposium on Wikis and Open Collaboration - WikiSym '12  
We present a novel architecture for the integration of Natural Language Processing (NLP) capabilities into wiki systems.  ...  We implemented these ideas based on MediaWiki and present a number of real-world application case studies that illustrate the practicability and effectiveness of this approach.  ...  server response structure example transformation functionality that can be reused by clients to communicate with the Semantic Assistants server and transform NLP results to other useful data types.  ... 
doi:10.1145/2462932.2462946 dblp:conf/wikis/SateliW12 fatcat:7b332zl2prfh7obw7uhfgwmn3i

Context Aware Information Retrieval for Enhanced Situation Awareness

Ali Bahrami, Jun Yuan, Paul R. Smart, Nigel R. Shadbolt
2007 MILCOM 2007 - IEEE Military Communications Conference  
The exploitation of this knowledge, using appropriate domain ontologies, will make it feasible to provide contextual assistance in various ways to the work performed according to a user's taskrelevant  ...  The approach lays on five intertwined fundamental concepts, namely Workflow, Context, Ontology, Profile and Information Aggregation.  ...  Army Research Laboratory and the U.K. Ministry of Defense and was accomplished under Agreement Number W911NF-06-3-0001.  ... 
doi:10.1109/milcom.2007.4454827 fatcat:bxfrtu522fahzpp5onctaodiky
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