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Ontology Support for Biomedical Information Resources

Tharam Dillon, Elizabeth Chang, Maja Hadzic
<span title="">2008</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/qrxicfzd5jcahil6pr67l466ju" style="color: black;">2008 21st IEEE International Symposium on Computer-Based Medical Systems</a> </i> &nbsp;
information about human diseases from a number of heterogeneous and dispersed information resources.  ...  The importance of ontologies has been recognised within the biomedical domain and work has begun on developing and sharing biomedical ontologies.  ...  Ontologies can be used for systematic annotation of information available through various information resources.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cbms.2008.21">doi:10.1109/cbms.2008.21</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/cbms/DillonCH08.html">dblp:conf/cbms/DillonCH08</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rpgo3dhtfva67feujl3tfthb6q">fatcat:rpgo3dhtfva67feujl3tfthb6q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922031730/https://espace.curtin.edu.au/bitstream/handle/20.500.11937/39639/116070_Ontology%20support%20for04561946.pdf?sequence=2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/00/88/0088bd6a01f6ce9d9b77002f8b6ce1c283ba3d8a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cbms.2008.21"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Ontology metadata to support the building of a library of biomedical ontologies

Kaustubh Supekar, Mark Musen
<span title="">2005</span> <i title="American Medical Informatics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/g6q27b56yzeupjryv6lby2r2pa" style="color: black;">AMIA Annual Symposium Proceedings</a> </i> &nbsp;
Form to annotate an ontology resource. The interface shows the metadata information captured for the MGED Ontology.  ...  for ontology resources based on the Metadata ontology.  ...  for ontology resources based on the Metadata ontology.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16779413">pmid:16779413</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1560607/">pmcid:PMC1560607</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vlgwl4lg5faxnot2l5etva3zw4">fatcat:vlgwl4lg5faxnot2l5etva3zw4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200506055134/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC1560607&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3e/ee/3eee1f60bd38c00774798aaeff38bc1af2f36937.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560607" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

eagle-i: An Ontology-Driven Framework For Biomedical Resource Curation And Discovery

Erik Segerdell, Erik Segerdell, Melanie Wilson, Ted Bashor, Daniela Bourges-Waldegg, Karen Corday, H. Robert Frost, Tenille Johnson, Christopher Shaffer, Larry Stone, Carlo Torniai, Melissa Haendel
<span title="2010-11-04">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfizkffjyzhple2sfhgk46dk2e" style="color: black;">Nature Precedings</a> </i> &nbsp;
its repository locally using a web interface. • The tool will support the import, and semi-automated annotation with eagle-i ontology classes, of resource information from various external digital systems  ...  The Consortium is developing a proof of concept of this network using an ontology-driven approach for resource annotation and discovery.  ...  . • The tool will support the import, and semi-automated annotation with eagle-i ontology classes, of resource information from various external digital systems. • Every resource is reviewed by an eagle-i  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2010.5176.1">doi:10.1038/npre.2010.5176.1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cdny3f6dhffjtdqmfoh7rjvlne">fatcat:cdny3f6dhffjtdqmfoh7rjvlne</a> </span>
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Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support

O. Bodenreider
<span title="">2008</span> <i title="Georg Thieme Verlag KG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/25ybzim6mvglde3zgjvka7ehii" style="color: black;">IMIA Yearbook of Medical Informatics</a> </i> &nbsp;
The roles played by biomedical ontologies are classified into three major categories: knowledge management (indexing and retrieval of data and information, access to information, mapping among ontologies  ...  Objectives To provide typical examples of biomedical ontologies in action, emphasizing the role played by biomedical ontologies in knowledge management, data integration and decision support.  ...  Acknowledgments This research was supported in part by the Intramural Research Program of the National Institutes of Health (NIH), National Library of Medicine (NLM).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1055/s-0038-1638585">doi:10.1055/s-0038-1638585</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/r7vz4bruq5fpxa5nhhgcxohd2e">fatcat:r7vz4bruq5fpxa5nhhgcxohd2e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501024216/https://www.thieme-connect.de/products/ejournals/pdf/10.1055/s-0038-1638585.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ce/10/ce10f958a90455a05404747c4c740b758acede3e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1055/s-0038-1638585"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Biomedical ontologies in action: role in knowledge management, data integration and decision support

O Bodenreider
<span title="">2008</span> <i title="Georg Thieme Verlag KG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/25ybzim6mvglde3zgjvka7ehii" style="color: black;">IMIA Yearbook of Medical Informatics</a> </i> &nbsp;
Biomedical ontologies selected for their practical impact are examined from a functional perspective.  ...  The roles played by biomedical ontologies are classified into three major categories: knowledge management (indexing and retrieval of data and information, access to information, mapping among ontologies  ...  Acknowledgments This research was supported in part by the Intramural Research Program of the National Institutes of Health (NIH), National Library of Medicine (NLM).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18660879">pmid:18660879</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2592252/">pmcid:PMC2592252</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/axl74koixzbffmfi6m3txvlwqu">fatcat:axl74koixzbffmfi6m3txvlwqu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200710105933/https://www.thieme-connect.com/products/ejournals/pdf/10.1055/s-0038-1638585.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6a/4a/6a4a7deaa73021e8983aff92e9bda2f355879136.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2592252" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Patricia Whetzel, Patricia Whetzel, Nigam Shah, Natalya Noy, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Cherie Youn, Adrien Coulet, Chris Callendar, Daniel Rubin (+4 others)
<span title="2009-10-16">2009</span> <i title="Springer Nature America, Inc"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfizkffjyzhple2sfhgk46dk2e" style="color: black;">Nature Precedings</a> </i> &nbsp;
For more information on NCBO and working with the Center, visit http://bioontology.org/ or email support@bioontology.org. BioPortal Web Services •!  ...  Acknowledgements BioPortal is developed by the National Center for Biomedical Ontology (NCBO), one of seven National Centers for Biomedical Computing under the NIH Roadmap.  ...  for biomedical ontologies.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2009.3868">doi:10.1038/npre.2009.3868</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/znrxxhuw7nek5jmacsi5pp2siu">fatcat:znrxxhuw7nek5jmacsi5pp2siu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170812192659/http://precedings.nature.com/documents/3868/version/1/files/npre20093868-1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9a/bf/9abf1406005ca545048e1a51e87c7f1342f462f2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2009.3868"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Patricia Whetzel, Clement Jonquet, Barry Smith, Cherie Youn, Margaret-Anne Storey, Adrien Coulet, Christopher Chute, Chris Callendar, Mark Musen, Nigam Shah, Natalya Noy, Benjamin Dai (+3 others)
<span title="2009-10-16">2009</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfizkffjyzhple2sfhgk46dk2e" style="color: black;">Nature Precedings</a> </i> &nbsp;
For more information on NCBO and working with the Center, visit http://bioontology.org/ or email support@bioontology.org. BioPortal Web Services •!  ...  Acknowledgements BioPortal is developed by the National Center for Biomedical Ontology (NCBO), one of seven National Centers for Biomedical Computing under the NIH Roadmap.  ...  for biomedical ontologies.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2009.3868.1">doi:10.1038/npre.2009.3868.1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/j3mywcp5orb6jl67z25dnuc24y">fatcat:j3mywcp5orb6jl67z25dnuc24y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170812192659/http://precedings.nature.com/documents/3868/version/1/files/npre20093868-1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9a/bf/9abf1406005ca545048e1a51e87c7f1342f462f2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2009.3868.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge

Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Sima Misra, Monte Westerfield, Michael Ashburner, Ida Sim, Christopher G. Chute, Margaret-Anne Storey, Barry Smith, John Day-Richter, Natalya F. Noy (+1 others)
<span title="">2006</span> <i title="Mary Ann Liebert Inc"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zlgxgb5uazdqdfh5i5hk25cjge" style="color: black;">Omics</a> </i> &nbsp;
, (2) to create new software tools so that scientists can use ontologies to annotate and analyze biomedical data, (3) to provide a national resource for the ongoing evaluation, integration, and evolution  ...  of biomedical ontologies and associated tools and theories in the context of driving biomedical projects (DBPs), and (4) to disseminate the tools and resources of the Center and to identify, evaluate,  ...  ontology resources for the biomedical community.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1089/omi.2006.10.185">doi:10.1089/omi.2006.10.185</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16901225">pmid:16901225</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/s6m4gcw645fwrhnkc4zky7bav4">fatcat:s6m4gcw645fwrhnkc4zky7bav4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170705135502/https://philpapers.org/archive/RUBTNC-4.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c1/1d/c11d16ce83541c8647497c132091ecf08679ca7e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1089/omi.2006.10.185"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

BioPortal: ontologies and integrated data resources at the click of a mouse

N. F. Noy, N. H. Shah, P. L. Whetzel, B. Dai, M. Dorf, N. Griffith, C. Jonquet, D. L. Rubin, M.-A. Storey, C. G. Chute, M. A. Musen
<span title="2009-05-29">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Biomedical ontologies provide essential domain knowledge to drive data integration, information retrieval, data annotation, natural-language processing and decision support.  ...  of biomedical resources.  ...  BioPortal not only provides investigators, clinicians and developers 'one-stop shopping' to programmatically access biomedical ontologies, but also integrates data from various biomedical resources.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkp440">doi:10.1093/nar/gkp440</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19483092">pmid:19483092</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2703982/">pmcid:PMC2703982</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lbiqy5zoszaadkullyg46a76zi">fatcat:lbiqy5zoszaadkullyg46a76zi</a> </span>
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National Center for Biomedical Ontology [chapter]

Mark A. Musen
<span title="">2013</span> <i title="Springer New York"> Encyclopedia of Systems Biology </i> &nbsp;
provides the cornerstone of software for bridging systems, domains, and resources. 2 Ontologies are the foundation of all semantic technologies in e-science, and are a critical component of multi-disciplinary  ...  In biomedicine, one of the most fruitful approaches has been to use software tools and knowledge resources known as ontologies-machineprocessable descriptions of scientific domains-that can promote the  ...  The Index offers the biomedical community a common interface for information retrieval, linking the dozens of ontologies in BioPortal to dozens of biomedical data resources.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4419-9863-7_1515">doi:10.1007/978-1-4419-9863-7_1515</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3fb7uzhelvgdzlcbmuaekggtyu">fatcat:3fb7uzhelvgdzlcbmuaekggtyu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170811213646/https://philpapers.org/archive/RUBTNC-3.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/15/37/1537cd877fc7ac2889864ce35dde69ebbdca44d2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4419-9863-7_1515"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Beyond the data deluge: Data integration and bio-ontologies

Judith A. Blake, Carol J. Bult
<span title="">2006</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p4kk6lusgrhyxecgig72iasi5q" style="color: black;">Journal of Biomedical Informatics</a> </i> &nbsp;
the development of bio-ontologies to support dynamic reasoning for knowledge discovery.  ...  Despite the profound impact ontologies are having on the digital categorization of biological knowledge, new biomedical research and the expanding and changing nature of biological information have limited  ...  The role and future of biomedical ontologies Biomedical ontologies provide the semantic structure that supports integration and comparison of large, complex data sets in biology.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jbi.2006.01.003">doi:10.1016/j.jbi.2006.01.003</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16564748">pmid:16564748</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vueeou3fybgkxda55hccmkjb3y">fatcat:vueeou3fybgkxda55hccmkjb3y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20100614193339/http://shera.ils.unc.edu/~rahul/spiromics/Dokuwiki/lib/exe/fetch.php?media=beyond_the_data_deluge:data_integration_and_bio-ontologies.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/16/75/167540589224ecdfa1b0353c0f504864d582da8e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jbi.2006.01.003"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

BIOMEDICAL ONTOLOGIES

O. BODENREIDER, J. A. MITCHELL, A. T. MCCRAY
<span title="">2003</span> <i title="WORLD SCIENTIFIC"> Biocomputing 2004 </i> &nbsp;
Ultimately, the applications supported by biomedical ontologies will not only make it possible for biologists to keep up with an increasing amount of information, but hopefully also free them from the  ...  A first group of papers investigates foundational issues in biomedical ontology as well as the creation of ontological resources.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9789812704856_0016">doi:10.1142/9789812704856_0016</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/d7jq5kpm4fbpnklzbszvuvcgry">fatcat:d7jq5kpm4fbpnklzbszvuvcgry</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20150619232054/http://psb.stanford.edu/psb-online/proceedings/psb2005/intro-ontologies.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bd/89/bd898055b6bc4e1506e40a1f29260cd9a55a8286.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9789812704856_0016"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> worldscientific.com </button> </a>

Semantic Grid for Biomedical Ontologies

Farhan Shafiq, Sheikh Kashif Raffat, Muhammad Shahab Siddiqui
<span title="2011-06-30">2011</span> <i title="Foundation of Computer Science"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/b637noqf3vhmhjevdfk3h5pdsu" style="color: black;">International Journal of Computer Applications</a> </i> &nbsp;
The biomedical ontologies contain the complex distributed heterogeneous data, to analyze and process this data is the big challenge for biomedical communities.  ...  In this paper we discuss two biomedical ontologies, Biological Viruses Community Ontology (BVCO) and the most mature Gene Ontology (GO). General Terms Biomedical dataset, Future Web.  ...  Why we need to use Grid Computing for Biomedical Ontologies? 2. What kind of information should grid nodes contain? 3. Should biomedical data be classified in ontologies? 4.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5120/2887-3765">doi:10.5120/2887-3765</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pgvrxbpxg5gg7g2ni33d5irete">fatcat:pgvrxbpxg5gg7g2ni33d5irete</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809195848/http://www.ijcaonline.org/volume23/number5/pxc3873765.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4d/5a/4d5a62a1fc646314de66e1962a9abe7150007f6f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5120/2887-3765"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Biomedical ontologies: a functional perspective

D. L. Rubin, N. H. Shah, N. F. Noy
<span title="2007-10-23">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/op7ztx4fhvairowgqifu7dnvsi" style="color: black;">Briefings in Bioinformatics</a> </i> &nbsp;
The information explosion in biology makes it difficult for researchers to stay abreast of current biomedical knowledge and to make sense of the massive amounts of online information.  ...  Shah is a research scientist at the Stanford Center for Biomedical Informatics group and member of the National Center for Biomedical Ontology.  ...  Acknowledgements This work was supported by the National Center for Biomedical Ontology, under roadmap-initiative grant U54 HG004028 from the National Institutes of Health.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/bbm059">doi:10.1093/bib/bbm059</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18077472">pmid:18077472</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/z3orlk75yzherjf37i3nehqlmm">fatcat:z3orlk75yzherjf37i3nehqlmm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190308201219/http://pdfs.semanticscholar.org/edf4/dd442520fcea10ab49e4a6e0ffbeedb67313.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ed/f4/edf4dd442520fcea10ab49e4a6e0ffbeedb67313.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/bbm059"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

IMIA LaMB WG publications: 'Biomedical Semantics in the Big Data Era' - conference paper introducing the related workshop, MEDINFO, 2015

Ronald Cornet, Laszlo Balkanyi, Olivier Bodenreider
<span title="2019-09-06">2019</span> <i title="Zenodo"> Zenodo </i> &nbsp;
At the same time, the resources of biomedical semantics both support the exploitation of these datasets and benefit from them for their own refinement.  ...  , maintain, and validate semantic resources as well as to tackle decision-support challenges in health and life sciences.  ...  resources, and those using them to perform biomedical data analytics or decision support.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3399568">doi:10.5281/zenodo.3399568</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bgkapibaabejlosypvtzcg4jqq">fatcat:bgkapibaabejlosypvtzcg4jqq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201222141205/https://zenodo.org/record/3399568/files/2015%20Biom%20Sem%20Big%20Data%20ws%20paper.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/21/76/217630a87db5d1c506c693d8e0d190c5272a5c04.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.3399568"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>
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