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Satellites, the Elsevier Format for Ancillary Information to Scientific Journals and Books

David Kuilman, Martin Ruck
2011 International Conference on Dublin Core and Metadata Applications  
The satellite format allows for an array of configurable features to be defined on a perproject basis to specify the metadata object and its required business usage.  ...  strings within the document to concept URIs in scientific vocabularies.  ...  Quality control on metadata that is scalable for production Quality control of content and metadata to content are enforced using XML-based validation frameworks.  ... 
dblp:conf/dc/KuilmanR11 fatcat:u34vcxvogbghtaq22vgemzj4vq

An analysis and comparison of keyword recommendation methods for scientific data

Youichi Ishida, Toshiyuki Shimizu, Masatoshi Yoshikawa
2020 International Journal on Digital Libraries  
Therefore, the annotation of scientific data with keywords from a controlled vocabulary is a time-consuming task for data providers.  ...  To classify and search various kinds of scientific data, it is useful to annotate those data with keywords from a controlled vocabulary.  ...  Acknowledgements We have discussed how to proceed with this research with Dr. Hiroko Kinutani and Dr. Masafumi Ono at the University of Tokyo.  ... 
doi:10.1007/s00799-020-00279-3 fatcat:yqkbj7l3wrd77dc5xxa4l5ghym

Annotation of Chest Radiology Reports for Indexing and Retrieval [chapter]

Dina Demner-Fushman, Sonya E. Shooshan, Laritza Rodriguez, Sameer Antani, George R. Thoma
2015 Lecture Notes in Computer Science  
Annotation of MEDLINE citations with controlled vocabulary terms improves the quality of retrieval results.  ...  Manual annotation captured the most salient findings in the reports and normalized the sparse distinct descriptions of similar findings to one controlled vocabulary term.  ...  Acknowledgments This work was supported by the intramural research program of the U. S. National Library of Medicine, National Institutes of Health.  ... 
doi:10.1007/978-3-319-24471-6_9 fatcat:rnl65p65mfgihiwgmx7njwtppq

Personalization in crowd-driven annotation for cultural heritage collections

Chris Dijkshoorn, Jasper Oosterman, Lora Aroyo, Geert-Jan Houben
2012 User Modeling, Adaptation, and Personalization  
The current trend appears to focus on supporting 'the crowd' to achieve the desired level of quality.  ...  Various of these experimented with a crowd of lay people to help with the annotation of cultural heritage artefacts. However, a common concern relates to the resulting quality.  ...  This publication was supported by the Dutch national program COMMIT.  ... 
dblp:conf/um/DijkshoornOAH12 fatcat:3cltonq3n5hnvoljrhdzctxxlm

Fitness for Use: The BDQIG aims for improved Stability and Consistency

Arthur Chapman, Antonio Saraiva, Lee Belbin, Allan Veiga, Miles Nicholls, Paula Zermoglio, Paul Morris, Dmitry Schigel, Alexander Thompson
2017 Biodiversity Information Science and Standards  
The process of choosing data for a project and then determining what subset of records are suitable for use has become one of the most important concerns for biodiversity researchers in the 21 century.  ...  There has been no consistency between the various aggregators on how best to clean and document the quality -how tests are run, or how annotations are stored and reported.  ...  Feeding back information to the data custodians from users and aggregators on suspect records is essential, and this is where annotations and reporting back on the results of tests conducted by aggregators  ... 
doi:10.3897/tdwgproceedings.1.20240 fatcat:xdw55ptcbnd5vonwcfoxpwzvk4

Learning to Annotate Scientific Publications

Minlie Huang, Zhiyong Lu
2010 International Conference on Computational Linguistics  
Unlike previous studies that focused on usercentric annotation, this paper presents our investigation of various annotation characteristics on service-centric annotation.  ...  Using a large number of publicly available annotated scientific publications, we characterized and compared the two different types of annotation processes.  ...  Acknowledgements This work was supported by the Intramural Research Program of the NIH, National Library of Medicine.  ... 
dblp:conf/coling/HuangL10 fatcat:3dabva3vwfc3jpu7yz6pzpa2w4

Chado Controller: advanced annotation management with a community annotation system

Valentin Guignon, Gaëtan Droc, Michael Alaux, Franc-Christophe Baurens, Olivier Garsmeur, Claire Poiron, Tim Carver, Mathieu Rouard, Stéphanie Bocs
2012 Computer applications in the biosciences : CABIOS  
It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all  ...  We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo.  ...  Conflict of Interest: none declared.  ... 
doi:10.1093/bioinformatics/bts046 pmid:22285827 pmcid:PMC3315714 fatcat:xd755nerbnbmtpymvereiobw2a

Disease model curation improvements at Mouse Genome Informatics

S. M. Bello, J. E. Richardson, A. P. Davis, T. C. Wiegers, C. J. Mattingly, M. E. Dolan, C. L. Smith, J. A. Blake, J. T. Eppig
2012 Database: The Journal of Biological Databases and Curation  
Acknowledgements The authors would like to thank Drs Lynn Schriml and Warren Kibbe for their helpful discussions on the status of the Disease Ontology. Conflict of interest. None declared.  ...  CTD loads the vocabularies from MeSH and OMIM on a monthly basis and quality control processes identify changes to these vocabularies, which require curation of the merged vocabulary.  ...  Based on the existing text annotations, all of these models could be annotated to a term in the extended vocabulary.  ... 
doi:10.1093/database/bar063 pmid:22434831 pmcid:PMC3308153 fatcat:mlhqsogsjja5dgusmmctyygtte

Economic diagnostics of the quality of higher education and the basics of its modeling

Sotvoldiev Nodirbek Jurabaevich, Sirojiddinov Ikromiddin Kutbiddinovich
2019 International Journal on Integrated Education  
There are scientific conclusions and practical recommendations on the economic assessment of the quality of higher education.  ...  The article analyzes the quality of higher education and its economic diagnosis. Defined methods for modeling economic diagnostics.  ...  Benefits of Multimedia-enhanced Dictionaries Other research that focused on vocabulary development with technology argued for the increased effectiveness of multimedia-enhanced electronic dictionaries  ... 
doi:10.31149/ijie.v2i4.115 fatcat:kuqgapfvuza47jwfsfa2q5kixq

The Effect of Electronic Dictionaries and Hypermedia Annotations on English Major Students' Reading Compression and Vocabulary Learning

Ahmad Mousa Bataineh
2014 International Journal of Linguistics  
This study explored the effect of using electronic dictionaries and hypermedia annotations on university students' receptive language skills, specifically reading comprehension and vocabulary acquisition  ...  The group was divided into two sections: section one was assigned as an experimental group, and section two was assigned as a control group.  ...  They studied the effects of an advanced dynamic visual organizer on the macro level and the effects of hypermedia annotations for single vocabulary items on the micro level.  ... 
doi:10.5296/ijl.v6i4.6025 fatcat:v2k6e2ogongppd7xiwyuougz7y

Semantic Disambiguation in Folksonomy: A Case Study [chapter]

Pierre Andrews, Juan Pane, Ilya Zaihrayeu
2011 Lecture Notes in Computer Science  
One of the factors of success was the simplicity of the underlying model, which consists of a resource (e.g., a web page), a tag (e.g., a text string), and a user who annotates the resource with the tag  ...  to the proposed model; c) report on the results of such a conversion on the example of a dataset; and d) show how the quality of search can be improved by the semantic in the converted dataset  ...  We would also like to thank Sergey Kanshin for his contribution to the development of a system used for the evaluation.  ... 
doi:10.1007/978-3-642-23160-5_8 fatcat:exovcsj6nrfxtkac5dptmg3uyq

Promoting Semantic Annotation of Research Data by Their Creators: A Use Case with B2NOTE at the End of the RDM Workflow [chapter]

Yulia Karimova, João Aguiar Castro, João Rocha da Silva, Nelson Pereira, Cristina Ribeiro
2017 Communications in Computer and Information Science  
The TAIL project, at the University of Porto, proposes workflows based on Dendro, a collaborative environment that helps researchers prepare well described datasets and deposit them in a data repository  ...  Data is organized and described in Dendro; deposited in B2SHARE; and semantic annotation is performed with the new B2NOTE service from EUDAT.  ...  We thank Yann Le Frank and the B2NOTE team for the availability of the beta version of B2NOTE and the helpful remarks. References  ... 
doi:10.1007/978-3-319-70863-8_11 fatcat:vmraczgnwjcv5azwygggyzbk5y

A classification of semantic annotation systems

Pierre Andrews, Ilya Zaihrayeu, Juan Pane
2012 Semantic Web Journal  
Doing so, we provide a clear classification schemes of the features of annotation systems.  ...  annotation and review a number of research and end-user tools in the field.  ...  The authors would like to thank Denys Babenko, Tobias Bürger, and Borislav Popov for their valuable contribution made at early stages of this work.  ... 
doi:10.3233/sw-2011-0056 fatcat:zn4dv27gmvfvtcv7vu3tqikjma

MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation

Leandro Hermida, Olivier Schaad, Philippe Demougin, Patrick Descombes, Michael Primig
2006 BMC Bioinformatics  
MIMAS provides life scientists with a highly flexible and focused GeneChip data storage and annotation platform essential for subsequent analysis and interpretation of experimental results with clustering  ...  MIMAS implements a novel concept for nation-wide GeneChip data management whereby a network of facilities is centered on one data node directly connected to the European certified public microarray data  ...  Acknowledgements We gratefully acknowledge the support of A. Brazma (EBI) and we thank him and M. Kapushesky (EBI) for critical reading of the manuscript. We thank R. Poehlmann, R.  ... 
doi:10.1186/1471-2105-7-190 pmid:16597336 pmcid:PMC1459208 fatcat:wl2v4mtofnbgpm5mysazanhu6i

Development of an Ontology of Microbial Phenotypes (OMP)

Marcus Chibucos, Michelle Giglio, Chris Mungall, Peter Uetz, Lanlan Yin, Johannes Goll, Deborah Siegele, Marcus Chibucos, James Hu
2009 Nature Precedings  
In the pre-coordinated approach, one controlled set of PATO terms will be used for term generation, and the fact of storing all the terms in one controlled vocabulary will enforce consistency and uniformity  ...  This will require two key components: 1) an Ontology of Microbial Phenotypes (OMP) that captures phenotype descriptions in a controlled vocabulary, and 2) a set of evidence codes based on extension of  ... 
doi:10.1038/npre.2009.3639.1 fatcat:53fsmbtt2bdgxh4chsp233q7c4
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