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On the Computational Complexity of Conservative Computing [chapter]

Giancarlo Mauri, Alberto Leporati
2003 Lecture Notes in Computer Science  
Workshop MIUR/COFIN -September 19-21, Ravello (SA) -p. 23 Complexity of ConsComp Theorem: ConsComp is NP-complete. Proof. Reduction from Partition (details on the paper).  ...  reversible dvalued gates, as defined by [Cattaneo, Leporati and Leporini, 2002] • if n = m and d = 2, the conservation of the number of 1's given in input for reversible Boolean gates Bounds on the  ...  ) < 2M ≤ 2 · opt(I) Conclusions We have: • proposed the first steps towards a theory of conservative computations • introduced a new NP-complete decision problem (ConsComp) and a new NP-hard optimization  ... 
doi:10.1007/978-3-540-45138-9_5 fatcat:qg5jpvj7ird3pfidwhzzac2cwm

On Exact Conservation for the Euler Equations with Complex Equations of State

J. W. Banks
2010 Communications in Computational Physics  
Here we investigate the case of the Euler equations for a single gas using the Jones-Wilkins-Lee (JWL) equation of state.  ...  Furthermore, we demonstrate that under certain conditions, a quasi-conservative method can exhibit higher rates of convergence near shocks than a strictly conservative counterpart of the same formal order  ...  Acknowledgements This study has been supported by Lawrence Livermore National Laboratory under the auspices of the U.S. Department of Energy through contract number DE-AC52-07NA27344.  ... 
doi:10.4208/cicp.090909.100310a fatcat:zbrht5tlg5eszing7yvwjybwcu

Derivation and Application of a Conserved Orbital Energy for the Inverted Pendulum Bipedal Walking Model

Jerry E. Pratt, Sergey V. Drakunov
2007 Engineering of Complex Computer Systems (ICECCS), Proceedings of the IEEE International Conference on  
Given expressions for the Orbital Energy, we can compute where the foot should be placed or how the Center of Mass trajectory should be modified in order to achieve a desired velocity on the next step.  ...  Using this model, we derive expressions for a conserved quantity, the "Orbital Energy", given a smooth Center of Mass trajectory.  ...  If one assumes a lossless transfer of support on each step, one can then determine where to place the foot in order to achieve a new Linear Inverted Pendulum Energy, and hence the velocity on the next  ... 
doi:10.1109/robot.2007.364196 dblp:conf/icra/PrattD07 fatcat:dyklwe7emjfp5iaggmtap3wsgq

Introduction

José Félix Costa, Nachum Dershowitz
2011 Natural Computing  
We thank all the reviewers who helped with this issue: Alastair Abbott, Larry  ...  The problem is one of computational resources: new computational models may consume new resources, with a corresponding need for new complexity measures.  ...  . • On the hierarchy of conservation laws in a cellular automaton, by Enrico Formenti, Jarkko Kari, and Siamak Taati Conservation laws in cellular automata are studied as an abstraction of the conservation  ... 
doi:10.1007/s11047-011-9247-z fatcat:vwwk4gaufjcw5ctoh2r3yppbn4

FastV: From-point Visibility Culling on Complex Models

Anish Chandak, Lakulish Antani, Micah Taylor, Dinesh Manocha
2009 Computer graphics forum (Print)  
We present an efficient technique to compute the potentially visible set (PVS) of triangles in a complex 3D scene from a viewpoint. The algorithm computes a conservative PVS at object space accuracy.  ...  In practice, the algorithm can compute the PVS of CAD and scanned models composed of millions of triangles at interactive rates on a multi-core PC.  ...  The three room acoustics models and anechoic audio clips are courtesy of The Virtual Acoustics group at Helsinki University of Technology.  ... 
doi:10.1111/j.1467-8659.2009.01501.x fatcat:njntmhyusfhbbauidorwudffim

Evolution of gene regulation--on the road towards computational inferences

G. Fuellen
2010 Briefings in Bioinformatics  
However, gain of understanding offers a reward beyond itself, since evolutionary considerations can enable discoveries in the first place, e.g. the computational identification of conserved transcription  ...  This network is defined as the complex interplay of the sequence, biochemical modifications and structure of the chromosomal DNA with the regulatory proteins/RNA (transcription factors, co-factors, regulating  ...  complexity of the evolutionary processes acting on it.  ... 
doi:10.1093/bib/bbq060 pmid:20702596 fatcat:iul5uujtdvafzcthc64eorcv5y

AN EVOLUTIONARY CONSERVATION-BASED METHOD FOR REFINING AND RERANKING PROTEIN COMPLEX STRUCTURES

BAHAR AKBAL-DELIBAS, IRINA HASHMI, AMARDA SHEHU, NURIT HASPEL
2012 Journal of Bioinformatics and Computational Biology  
Computational docking methods can provide researchers with a good starting point for the analysis of protein complexes.  ...  We tested our method on docked candidates of eight protein complexes and the results suggest that the proposed scoring function helps bias the search toward complexes with native interactions.  ...  Acknowledgments We thank the group of Dr. Olivier Lichtarge for their help in using the ET server. We also thank members of Haspel's and Shehu's research groups for useful discussions.  ... 
doi:10.1142/s0219720012420024 pmid:22809378 fatcat:bu4zbniycnfennq75cfv5pbgya

HotSprint: database of computational hot spots in protein interfaces

E. Guney, N. Tuncbag, O. Keskin, A. Gursoy
2007 Nucleic Acids Research  
The conserved residues in interfaces with certain buried accessible solvent area (ASA) and complex ASA thresholds are flagged as computational hot spots.  ...  We present a new database of computational hot spots in protein interfaces: HotSprint.  ...  The Open Access publication charges for this article were waived by the Oxford University Press.  ... 
doi:10.1093/nar/gkm813 pmid:17959648 pmcid:PMC2238999 fatcat:jsu3ydjcorbopj3hae3cza7mca

Page 1184 of Hydrological Processes Vol. 12, Issue 8 [page]

1998 Hydrological Processes  
Equation (2) provides the best basis on which to build a mass-conservative discretization of the transport equation.  ...  BEN SLAMA In particular we are here concerned with the SUBIEF module, which is used to compute the transport of one or more tracers.  ... 

Efficient Algorithms for Computing Conservative Portal Visibility Information

W. F. H. Jiménez, C. Esperança, A. A. F. Oliveira
2000 Computer graphics forum (Print)  
The geometry of this information is termed a 'visibility volume' and its computation is usually quite complex.  ...  In this paper we present techniques and algorithms which permit the computation of conservative viewing volumes incrementally.  ...  The time complexity of function ViewVolume2 is linear on the number of edges of its arguments. ii.  ... 
doi:10.1111/1467-8659.00441 fatcat:egwn42ov55hkfi26gwbmb2n5su

Structural analysis of conserved base pairs in protein-DNA complexes

L. A. Mirny
2002 Nucleic Acids Research  
Sites are used to compute conservation (information content) of each base pair, which indicates relative importance of the base pair in specific recognition.  ...  The main result of this study is that conservation of base pairs in a site exhibits significant correlation with the number of contacts the base pairs have with the protein.  ...  If a protein-DNA complex is available but recognition motif is unknown, one can compute the number of contacts per base pair and predict the most conserved ones.  ... 
doi:10.1093/nar/30.7.1704 pmid:11917033 pmcid:PMC101836 fatcat:57lb6nk4zbaitp35ukeapwuyre

Computer Aided Design of Extrusion Dies for Complex Geometry Profiles

Nelson D. Gonçalves, Ângela M. Ribau, Olga S. Carneiro, João M. Nóbrega
2012 Materials Science Forum  
This research team is involved since the mid-nineties on the development of computational tools to aid the design of thermoplastic profile extrusion dies.  ...  The inherent design freedom promoted by the employment of thermoplastic profiles is one of the major reasons for their attractiveness.  ...  This PhD programme aims at developing a new computational rheology code, based on the same numerical method (FVM) but using unstructured meshes, which are required to model the flow in more complex geometries  ... 
doi:10.4028/www.scientific.net/msf.730-732.495 fatcat:bh4jro22zfci3hvg7oijrpcije

ClusterM: a scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks

Yijie Wang, Hyundoo Jeong, Byung-Jun Yoon, Xiaoning Qian
2020 BMC Genomics  
Background The current computational methods on identifying conserved protein complexes across multiple Protein-Protein Interaction (PPI) networks suffer from the lack of explicit modeling of the desired  ...  Conclusions ClusterM can better capture the desired topological property of a typical conserved protein complex, which is densely connected within the complex while being well-separated from the rest of  ...  Therefore, we can compute the fraction of the number of matched reference conserved complexes.  ... 
doi:10.1186/s12864-020-07010-1 pmid:33208103 pmcid:PMC7677834 fatcat:pcmipdjiwvc2bhwzlpzklq3u5u

Conservative logic

Edward Fredkin, Tommaso Toffoli
1982 International Journal of Theoretical Physics  
Conservative logic is a comprehensive model of computation which explicitly reflects a number of fundamental principles of physics, such as the reversibility of the dynamical laws and the conservation  ...  The first uses binary, variables and is the conservative-logic counterpart of switching theory; this model proves that universal computing capabilities are compatible with the reversibility and conservation  ...  In the remainder of this paper, we shall use the tools of conservative logic to deal with important issues of feasibility and of complexity of computational schemes.  ... 
doi:10.1007/bf01857727 fatcat:nal4qp7kbbclbgiy2peutjmske

Principle of Conservation of Computational Complexity [article]

Gerald Friedland, Alfredo Metere
2018 arXiv   pre-print
In this manuscript, we derive the principle of conservation of computational complexity.  ...  We also provide an alternative explanation for the undecidability of the halting problem based on the principle.  ...  Any findings and conclusions are those of the authors, and do not necessarily reflect the views of the funders.  ... 
arXiv:1712.01178v3 fatcat:dphk5e4zmvebfnyiplbqzmq5ka
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