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2020 IMIA Yearbook of Medical Informatics  
On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL.  ...  Ontology patterns for the representation of quality changes of cells in time.  ...  Rector A, Schulz S, Rodrigues J-M, Chute CG, Solbrig H On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL J Biomed Inform: X 2019 Jun 1;2:100002 In this paper  ... 
doi:10.1055/s-0040-1702011 fatcat:f4e6koub2zaarkob5ek5zg77fy

Towards an ontological infrastructure for chemical batch process management

E. Muñoz, A. Espuña, L. Puigjaner
2010 Computers and Chemical Engineering  
The capabilities of the envisaged ontological framework were assessed in a test bed PROCEL pilot plant: scheduling-monitoring and control-rescheduling was closed, information quality was accessed by knowledge  ...  A crucial step for batch process improvement and optimization is to develop information structures that streamline data gathering and, above all, are capable of integrating transactional data into a system  ...  of Science and Innovation (MICINN) through the project "Advanced Support System for Flexible Chemical and Petrochemical Production Processes" (DPI2006-05673) are fully appreciated.  ... 
doi:10.1016/j.compchemeng.2009.12.009 fatcat:sv2poitwdbfgndc3jw4rntro3m

Efficient data integration in the railway domain through an ontology-based methodology

Stijn Verstichel, Femke Ongenae, Leanneke Loeve, Frederik Vermeulen, Pieter Dings, Bart Dhoedt, Tom Dhaene, Filip De Turck
2011 Transportation Research Part C: Emerging Technologies  
Several mechanisms exist to integrate information systems. The approach presented in this paper discusses the integration on data level.  ...  10. 2 information. A high level of structured interoperability between information systems is required to correctly combine and manage this complex information.  ...  Stijn Verstichel and Femke Ongenae would like to thank the IWT, Institute for the promotion of Innovation through Science and Technology in Flanders for their PhD grants.  ... 
doi:10.1016/j.trc.2010.10.003 fatcat:mkiozimdzrdjpj7k7subcgcn3y

Design and Use of Semantic Resources: Findings from the Section on Knowledge Representation and Management of the 2020 International Medical Informatics Association Yearbook

Ferdinand Dhombres, Jean Charlet, Section Editors for the IMIA Yearbook Section on Knowledge Representation and Management
2020 IMIA Yearbook of Medical Informatics  
Methods: A comprehensive and standardized review of the biomedical informatics literature was performed to select the most interesting papers of KRM published in 2019, based on PubMed and ISI Web Of Knowledge  ...  Conclusion: In the KRM selection for 2019, research on knowledge representation demonstrated significant contributions both in the design and in the application of semantic resources.  ...  Acknowledgements We would like to thank Adrien Ugon for his support and the reviewers for their participation in the selection process of the IMIA Yearbook best papers.  ... 
doi:10.1055/s-0040-1702010 pmid:32823311 fatcat:rpbzawie7nf3hl5jzc6ttfycte

Validating ontologies in informatics systems: approaches and lessons learned for AEC

Tamer E. El-Diraby
2014 Journal of Information Technology in Construction  
, construct, and external) in each of the three dimensions.  ...  In their pursuit to represent a human-savvy machine interpretable model of knowledge, informatics ontologies span three dimensions: philosophy, artificial intelligence, and linguistics.  ...  The Web Ontology Language (OWL) is the de facto standard in coding ontologies in machine interpretable manner.  ... 
dblp:journals/itcon/El-Diraby14 fatcat:225pk6fafjfslagumze7cwbfya

Approaching Healthy City Ontology: First-Level Classes Definition Using BFO

Caterina Pietra, Roberto De Lotto, Rakan Bahshwan
2021 Sustainability  
Considering the definition of HC, the authors focus on the ontology process and the different typologies of ontological structures.  ...  In this paper, the authors discuss the concept of the HC from an ontological point of view to organize the highly complex system of elements and the mutual relations that constitute the idea of HC.  ...  Conflicts of Interest: The authors declare no conflict of interest.  ... 
doi:10.3390/su132413844 fatcat:uglg46kk55hsja4yrdvyou7mra

Entity-Centric Information Access with the Human-in-the-Loop for the Biomedical Domains

Seid Muhie Yimam, Steffen Remus, Alexander Panchenko, Andreas Holzinger, Chris Biemann
2017 Proceedings of the Biomedical NLP Workshop  
In this paper, we describe the concept of entity-centric information access for the biomedical domain.  ...  A key difference to other approaches is the centering around the user in a Human-in-the-Loop machine learning approach, where users define and extend categories and enable the system to improve via feedback  ...  Acknowledgments This research was supported by the Federal Ministry for Education and Research (Germany) under grant no. 01DS17033 and by the Volkswagen Foundation under grant no. 90 847.  ... 
doi:10.26615/978-954-452-044-1_006 dblp:conf/ranlp/YimamRPHB17 fatcat:hdxcbri63bfhhci2rjrwo2d2fy

XML-based approaches for the integration of heterogeneous bio-molecular data

Marco Mesiti, Ernesto Jiménez-Ruiz, Ismael Sanz, Rafael Berlanga-Llavori, Paolo Perlasca, Giorgio Valentini, David Manset
2009 BMC Bioinformatics  
XML has succeeded in the integration of heterogeneous biomolecular information, and has established itself as the syntactic glue for biological data sources.  ...  In this paper we survey the most interesting and novel approaches for the representation, integration and management of different kinds of biological data by exploiting XML and the related recommendations  ...  This article has been published as part of BMC Bioinformatics Volume 10 Supplement 12, 2009: Bioinformatics Methods for Biomedical Complex System Applications.  ... 
doi:10.1186/1471-2105-10-s12-s7 pmid:19828083 pmcid:PMC2762072 fatcat:n4tvxjx3ifadjbo4x7jbpx5zfa

XML-Based Approaches for the Integration of Heterogeneous Bio-Molecular Data [chapter]

Marco Mesiti, Ernesto Jiménez-Ruiz, Ismael Sanz, Rafael Berlanga-Llavori, Paolo Perlasca, Giorgio Valentini, David Manset
2011 Recent Advances in Biochemistry  
Conclusion: XML has succeeded in the integration of heterogeneous biomolecular information, and has established itself as the syntactic glue for biological data sources.  ...  Results: In this paper we survey the most interesting and novel approaches for the representation, integration and management of different kinds of biological data by exploiting XML and the related recommendations  ...  This article has been published as part of BMC Bioinformatics Volume 10 Supplement 12, 2009: Bioinformatics Methods for Biomedical Complex System Applications.  ... 
doi:10.1201/b13131-13 fatcat:ytu7u4pcbzgbflpblij6x3wwky

tribAIn—Towards an Explicit Specification of Shared Tribological Understanding

Patricia Kügler, Max Marian, Benjamin Schleich, Stephan Tremmel, Sandro Wartzack
2020 Applied Sciences  
The formalization of tribAIn is expressed in the W3C standard OWL DL.  ...  Due to the variety of test procedures and a lack of consistency in the terminology as well as the practice of publishing results in the natural language, accessing and reusing tribological knowledge is  ...  The formal representation of tribAIn is in the Web Ontology Language OWL 2 DL [30] and was carried out in the ontology editor Protégé [31] .  ... 
doi:10.3390/app10134421 fatcat:3yukqopflvhhlgegrj45mrem24

Making AI meaningful again [article]

Jobst Landgrebe, Barry Smith
2019 arXiv   pre-print
Artificial intelligence (AI) research enjoyed an initial period of enthusiasm in the 1970s and 80s.  ...  In this paper we draw attention to what we take to be serious problems underlying current views of artificial intelligence encouraged by these successes, especially in the domain of language processing  ...  Acknowledgements We would like to thank Prodromos Kolyvakis, Kevin Keane, James Llinas and Kirsten Gather for helpful comments.  ... 
arXiv:1901.02918v3 fatcat:zdcttdzlgzdgvkb3jws5pguq3a

Making AI meaningful again

Jobst Landgrebe, Barry Smith
2019 Synthese  
Artificial intelligence (AI) research enjoyed an initial period of enthusiasm in the 1970s and 80s, but this enthusiasm was tempered by a long interlude of frustration when genuinely useful AI applications  ...  In this paper we draw attention to what we take to be serious problems underlying current views of artificial intelligence encouraged by these successes, especially in the domain of language processing  ...  Acknowledgements We would like to thank Prodromos Kolyvakis, Kevin Keane, James Llinas and Kirsten Gather for helpful comments.  ... 
doi:10.1007/s11229-019-02192-y fatcat:fhhjqf27lrhkfakif5j36rsr6a

Ontology Alignment using Biologically-inspired Optimisation Algorithms

Jürgen Bock
2012
Identifying overlaps between ontologies is a problem tackled by the discipline of ontology alignment.  ...  The application of these biologically-inspired optimisation techniques demonstrates improved scalability, flexibility, taking account of global alignment constraints, and anytime behaviour.  ...  Using the GO and MeSH in an integrated manner can provide an added value to biomedical information systems [27] .  ... 
doi:10.5445/ir/1000028909 fatcat:v4hht5ry7rddlpjjtji52itw6m

Ontology Alignment using Biologically-inspired Optimisation Algorithms

Jürgen Bock
2013
The diversity of available ontologies results in a heterogeneous landscape where ontologies can overlap in their content.  ...  It could be shown that biologically-inspired optimisation techniques are applicable to the ontology alignment problem and can compute alignments of good quality depending on the configuration of the objective  ...  Using the GO and MeSH in an integrated manner can provide an added value to biomedical information systems [27] .  ... 
doi:10.5445/ksp/1000030761 fatcat:dpezo24sofgnvh3z3f2jsufvfi

Community-driven & Work-integrated Creation, Use and Evolution of Ontological Knowledge Structures

Simone Braun
2012
One big challenge for today's organizations and knowledge workers is the focused discovery of new information that is likely to be interesting and useful in order to generate new knowledge.  ...  Originally developed by Stanford Center for Biomedical Informatics Research at the Stanford University School of Medicine for creating knowledge bases and ontologies in biomedical informatic research,  ...  It will bring a wealth of useful material and make it possible to refine searches. 2. Having contacts, websites, tags and all the information in one place.  ... 
doi:10.5445/ir/1000025701 fatcat:jaw3fgmcx5es7aoxfqzw4w2u3y
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