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Omega-Psir: From the Repository to the Research Knowledge Base Experience of Warsaw University of Technology

Henryk Rybiński, Jakub Koperwas, Łukasz Skonieczny, Marek Kozłowski, Marek Kozłowski
2013 Foundations of Management  
An experience in developing a specialised software for building such a knowledge base is presented.  ...  efficient full-text search capabilities in both metadata and digital objects is available, • the system provides means for automatic generation of highly ergonomic and customisable GUI, • the system provides  ...  For each URL, it tries to extract the bibliographic metadata existing on the webpage using an appropriate Zotero translator.  ... 
doi:10.2478/fman-2014-0006 fatcat:rgqjw6s7izcqbhtytssi3effju

A Method of Identifying Ontology Domain

Dan Wu, Anne Håkansson
2014 Procedia Computer Science  
However, these metadata are not always available in ontologies. To solve the problem, a method is developed to automatically discern the domain of an ontology.  ...  Metadata, such as the domain description and the purpose of an ontology, can be used to describe the context of ontologies for ontology integration.  ...  The OMEGA acquisition tool contains an algorithm that automatically returns hasDomain.  ... 
doi:10.1016/j.procs.2014.08.131 fatcat:uzuimki4wbf3xnfimpgv5ru4si

The Omega ontology [chapter]

Andrew Philpot, Eduard Hovy, Patrick Pantel, Chu-ren Huang, Nicoletta Calzolari, Aldo Gangemi, Alessandro Lenci, Alessandro Oltramari, Laurent Prevot
Ontology and the Lexicon  
We present the Omega ontology, a large terminological ontology obtained by remerging WordNet and Mikrokosmos, adding information from various other sources, and subordinating the result to a newly designed  ...  have benefited from Omega.  ...  In an effort to automatically update and grow ontologies, many researchers including the authors have proposed algorithms for harvesting shallow semantic resources such as term lists, conceptualizations  ... 
doi:10.1017/cbo9780511676536.016 fatcat:b4iq737q4zdv3moxz565k64lvm

Raw diffraction data preservation and reuse: overview, update on practicalities and metadata requirements

Loes M. J. Kroon-Batenburg, John R. Helliwell, Brian McMahon, Thomas C. Terwilliger
2017 IUCrJ  
Formulation of improved metadata descriptors for the raw data types of each of the IUCr Commissions is in progress; some detailed examples are provided.  ...  An overall context is set by highlighting the initiatives of science policy makers towards an 'Open Science' model within which crystallographers will increasingly work in the future; this will bring new  ...  The metadata associated with the raw data are an integral part of the database, so that it may be practicable in the future to reprocess automatically much of the raw data in the database as new algorithms  ... 
doi:10.1107/s2052252516018315 pmid:28250944 pmcid:PMC5331468 fatcat:m4u2b7bg7fa73huumkmcktu7wm

A Proof-Carrying Code Approach to Certificate Auction Mechanisms [chapter]

W. Bai, E. M. Tadjouddine, T. R. Payne, S. U. Guan
2014 Lecture Notes in Computer Science  
This enables software agents to automatically certify claimed auction properties and assist them in their decision-making.  ...  it can be highly desirable for software agents to engage in auctions, they are normally restricted to trading within known auctions, due to the complexity and heterogeneity of the auction rules within an  ...  Combining the generated auction ontology file with previously defined auction protocol ontology, we can generate an integral Semantic Web Auction system, which is expressed in Semantic Web Languages.  ... 
doi:10.1007/978-3-319-07602-7_4 fatcat:xu5og42e6vgnpa7tdo4jt43f6e

Using a Natural Language Understanding System to Generate Semantic Web Content

Akshay Java, Sergei Nirneburg, Marjorie McShane, Timothy Finin, Jesse English, Anupam Joshi
2007 International Journal on Semantic Web and Information Systems (IJSWIS)  
We describe our research on automatically generating rich semantic annotations of text and making it available on the Semantic Web.  ...  OntoSem, an implementation of the theory of ontological semantics under continuous development for over fifteen years, uses a specially constructed NLP-oriented ontology and an ontologicalsemantic lexicon  ...  Using OntoSem in the SemNews framework we have been able to demonstrate the potential of large scale semantic annotation and automatic metadata generation.  ... 
doi:10.4018/jswis.2007100103 fatcat:eaiy7xbztza6xjlyvirqii2kg4

Knowledge Representation for Multi-Scale Physiology Route Modeling

Natallia Kokash, Bernard de Bono
2021 Frontiers in Neuroinformatics  
FIGURE 17 | 17 Generated ApiNATOMY visualization of UOT. (A) 2d, (B) 3d. FIGURE 18 | 18 Fragment of an UOT instance. TABLE 1 | 1 Omega tree lyph topology.  ...  Hence, to produce an intuitively clear uncluttered graph visualization, we rely on our custom model rendering algorithm.  ...  This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY).  ... 
doi:10.3389/fninf.2021.560050 pmid:33664662 pmcid:PMC7921311 fatcat:rdl63eclorgnnkpktytpb4m5dy

Linked open data to represent multilingual poetry collections. A proposal to solve interoperability issues between poetic repertoires

Elena González-Blanco, Gimena del Rio, Clara Martínez Cantón
2016 Zenodo  
The conceptual semantic model, written in OWL, includes classes and metadata from standard ontological models related to humanities fields (such as CIDOC or Dublin Core), and adds specific elements and  ...  Th is paper describes the creation of a poetic ontology in order to use it as a basis to link different databases and projects w orking on metrics and poetry.  ...  Since 2013, our work on OLiA has been partially supported by the LOEWE cluster "Digital Humanities" at the Goethe-University Frankfurt (2011-2014) and a DFGfunded project on a Virtual Library for General  ... 
doi:10.5281/zenodo.2551595 fatcat:4nbzl534ebgnbort742fhfoqam

Information Retrieval using Machine Learning for Biomarker Curation in the Exposome-Explorer [article]

Andre Lamurias, Sofia Jesus, Vanessa Neveu, Reza M Salek, Francisco M Couto
2020 bioRxiv   pre-print
Several parameters and algorithms were evaluated to predict an article's relevance based on different datasets made of titles, abstracts and metadata.  ...  The top performance classifier was built with the Logistic Regression algorithm using the title and abstract set, achieving an F2-score of 70.1%.  ...  Afterwards, we performed biomarker recognition on the 707 articles iden- Table 6 as relevant (which included TPs and FPs), using an automatic annotation tool and manual validation.  ... 
doi:10.1101/2020.12.20.423685 fatcat:t2bhlwuj3fcx3o3mo7pvf4g5di

Mining to find the lipid interaction networks involved in Ovarian Cancers

Rajaraman Kanagasabai, Kothandaraman Narasimhan, Hong-Sang Low, Wee Tiong Ang, Aaron Z Fernandis, Markus R Wenk, Mahesh A Choolani, Christopher J O Baker
2009 Summit on translational bioinformatics  
We illustrate the deployment of semantic technologies; lipid ontology and text mining, in the aggregation and coordination of lipid literature.  ...  The products of such techniques can take the form of automatically generated summaries, target sentences or lists of binary relations between entities from abstracts for which subsequent networks can be  ...  we deployed data mining algorithms and visual query functionality.  ... 
pmid:21347172 pmcid:PMC3041567 fatcat:3bke7mgo7jhgziz5dq6yi7meom

Leveraging corporate context within knowledge-based document analysis and understanding

Claudia Wenzel, Heiko Maus
2001 International Journal on Document Analysis and Recognition  
This allows an easy definition of new analysis tasks and also an efficient and accurate analysis by using expectations about incoming documents as context information.  ...  An important application domain for such systems is the business letter domain. Here, high accuracy and the correct assignment to the right people and the right processes is a crucial success factor.  ...  The formalism is used for storing knowledge gained within a separate learning step automatically (which is not subject of this paper, but mentioned in [27] ), for retrieving general properties and analysis  ... 
doi:10.1007/pl00013567 fatcat:bkwubo4a6vbodkrpts2cxtpzme

Semantic Retrieval of Trademarks Based on Conceptual Similarity

Fatahiyah Mohd Anuar, Rossitza Setchi, Yu-Kun Lai
2016 IEEE Transactions on Systems, Man & Cybernetics. Systems  
This search generally looks for keywords that have authors’ knowledge, have not been adequately studied until been tagged as pre-defined metadata among items in a now.  ...  automatic deduction of compound-internal relations in GermaNet," [4] C. D.  ... 
doi:10.1109/tsmc.2015.2421878 fatcat:l4i23k4j7bfptknq2ghp7to7tq

Present State of CFD Softwares Application for Launch Vehicle Analysis
발사체 해석을 위한 CFD 소프트웨어 적용 현황

Hwanghui Jeong, Jae Yeol Kim, Jae-Ryul Shin
2020 Journal of the Korean Society of Propulsion Engineers  
This software program takes an XML representation of the contents of a Hierarchical Data Format-Earth Observing System (HDF-EOS) file and recreates the file from that description .  ...  The software can be used for both HDF-EOS2 and HDF-EOS5, and it automatically recognizes the two formats .Open SourceHDF-EOS Metadata Updater (HEMU) enables users to modify metadata inside an HDF-EOS file  ...  ) metadata file to an HDFEOS XML file .  ... 
doi:10.6108/kspe.2020.24.3.071 fatcat:trxkhiuqrjakll32bcjxskgwju

Wog - Well Optimization by Geosteering: a Pilot Software for Cooperative Modeling on Internet

J. F. Rainaud, O. Vincké, M. Elkouhen, M. Perrin, S. Brandel
2004 Oil & Gas Science and Technology  
The user's view is configured in accordance with nested (combined) business domain/generic workflow ontologies.  ...  Formally, an ontology can be considered as a graph of classes (like an empty structured file or a template), which can be filled by ontology instances, which catch the real world information created by  ...  APPENDIX 1 An example of Cooperation within WOG: Request of a GES Building Using the Wog Browser and the Geological Knowledge Editor (GKE) The following scenario describes the way one can use the WOG browser  ... 
doi:10.2516/ogst:2004029 fatcat:c33qaolqprcqvpjhjavbxpbyle

Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes [chapter]

Christian Grove, Scott Cain, Wen J. Chen, Paul Davis, Todd Harris, Kevin L. Howe, Ranjana Kishore, Raymond Lee, Michael Paulini, Daniela Raciti, Mary Ann Tuli, Kimberly Van Auken (+1 others)
2018 Msphere  
This chapter aims to provide an explanation of how to use basic features of WormBase, new features, and some commonly used tools and data queries.  ...  becoming available and as richer data sets are published, WormBase strives to maintain updated information, displays, and services to facilitate efficient access to and understanding of the knowledge generated  ...  This is an important feature as orthology predictions are very dependent on the underlying gene/protein sequences and algorithms used.  ... 
doi:10.1007/978-1-4939-7737-6_14 pmid:29761466 fatcat:pmvjwlblwrf6fkwid5fm272sfq
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