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Interactive simulation and visualization

C. Johnson, S.G. Parker, C. Hansen, G.L. Kindlmann, Y. Livnat
<span title="">1999</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dsrvu6bllzai7oj3hktnc5yf4q" style="color: black;">Computer</a> </i> &nbsp;
Computational steering is an emerging technology that addresses this problem by "closing the loop" and providing a mechanism for integrating modeling, simulation, data analysis, and visualization.  ...  In this paper, we describe the application of interactive simulation and visualization as applied to the domain of computational field problems.  ...  , numerical analysis, and scientific visualization.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/2.809252">doi:10.1109/2.809252</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ssq2kmv77zauroo5pfe3cw7mpe">fatcat:ssq2kmv77zauroo5pfe3cw7mpe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20040122183818/http://www.csit.fsu.edu:80/~erlebach/Website/papers/feature_extraction/ieee_computer99.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c1/65/c165b40b7e582ff41eb9cfb6af2747f7c0e0c19f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/2.809252"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Simulation techniques in hyperthermia treatment planning

Margarethus M. Paulides, Paul R. Stauffer, Esra Neufeld, Paolo F. Maccarini, Adamos Kyriakou, Richard A.M. Canters, Chris J. Diederich, Jurriaan F. Bakker, Gerard C. Van Rhoon
<span title="2013-05-14">2013</span> <i title="Informa UK Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/v7n6ajdchfb5fe7jb7t6mqgmti" style="color: black;">International Journal of Hyperthermia</a> </i> &nbsp;
Driven by the developments in computational techniques and computing power, personalized hyperthermia treatment planning (HTP) has matured and has become a powerful tool for optimizing treatment quality  ...  Electromagnetic, ultrasound, and thermal simulations using realistic clinical setups are now being performed to achieve patient-specific treatment optimization.  ...  Acknowledgments The authors of Erasmus MC are financially supported by the Dutch Cancer Society and Technology Foundation STW, the authors of Duke University hospital by NIH (grant PO1-CA42745), and IT'IS  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3109/02656736.2013.790092">doi:10.3109/02656736.2013.790092</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23672453">pmid:23672453</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3711016/">pmcid:PMC3711016</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dklawixdtvhhbk23riss3ueoke">fatcat:dklawixdtvhhbk23riss3ueoke</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200207044100/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3711016&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/37/3d/373d67150b8500cdd0f42afaa56aa355077551d0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3109/02656736.2013.790092"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711016" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Interactive Computing−Virtual Planning of Hip Joint Surgeries with Real-Time Structure Simulations

Jovana Knežević, Ralf-Peter Mundani, Ernst Rank
<span title="">2011</span> <i title="IACSIT Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ducnoejimngvtna6e6wxprm7la" style="color: black;">International Journal of Modeling and Optimization</a> </i> &nbsp;
Index Terms-Bone Mechanics, computational steering environment (cse), human femur, interactive computing, message passing interface (mpi).  ...  on-the-fly and enables real time interactive computational steering.  ...  It is often associated with numerical simulation experiments, especially where the pre-processing phase is time consuming and, thus, the opportunity to modify interactively either the geometry of the simulated  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7763/ijmo.2011.v1.53">doi:10.7763/ijmo.2011.v1.53</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vfhal54lofbgnl3i6zzyi4ft2e">fatcat:vfhal54lofbgnl3i6zzyi4ft2e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810001203/http://ijmo.org/papers/53-S043.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/aa/41/aa41c24ecb9bdbe9691d5f8611e9fc73a8ee0f5f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7763/ijmo.2011.v1.53"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Interactive Geometry Modification of High Performance Finite Element Simulations [article]

Corey Wetterer-Nelson, Kenneth E. Jansen, John A. Evans
<span title="2021-05-19">2021</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We employ existing in situ visualization techniques to rapidly inform the user of simulation progression, enabling computational steering.  ...  In this paper, we demonstrate a new interactive simulation pipeline targeting high performance finite element simulations where the computational domain is modifiable in situ, that is, while the simulation  ...  To do so, we turn to computational steering, or broadly, enabling users to interact with their simulation.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2005.00202v2">arXiv:2005.00202v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ia7lq6ztzvgyjfcwmdrsyme3i4">fatcat:ia7lq6ztzvgyjfcwmdrsyme3i4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210521075823/https://arxiv.org/pdf/2005.00202v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/15/e9/15e9000819761ab0f0033c41f9ca05c8c8eef5b8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2005.00202v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Quality of data driven simulation workflows

Michael Reiter, Uwe Breitenbucher, Oliver Kopp, Dimka Karastoyanova
<span title="">2012</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/j26tcszq2jfsppxyetteuxy2fq" style="color: black;">2012 IEEE 8th International Conference on E-Science</a> </i> &nbsp;
Simulations are long-running computations driven by non-trivial data dependencies.  ...  To prove technical feasibility, we present a prototype for controlling and steering simulation workflows and a real world simulation scenario.  ...  Acknowledgement The work presented in this paper has partly been funded by the DFG Cluster of Excellence Simulation Technology (http://www.simtech.uni-stuttgart.de) (EXC310) and by the BMWi project CloudCycle  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/escience.2012.6404417">doi:10.1109/escience.2012.6404417</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/eScience/ReiterBKK12.html">dblp:conf/eScience/ReiterBKK12</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2lqbt4ggovcivelriocsd2k6vu">fatcat:2lqbt4ggovcivelriocsd2k6vu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200210090234/http://www.si-journal.org/index.php/JSI/article/viewFile/189/253" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fd/05/fd05faa8eca3ecee95916fb536b1001c49410587.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/escience.2012.6404417"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

A rapid beam simulation framework for transcranial focused ultrasound

Steven A. Leung, Taylor D. Webb, Rachelle R. Bitton, Pejman Ghanouni, Kim Butts Pauly
<span title="2019-05-28">2019</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tnqhc2x2aneavcd3gx5h7mswhm" style="color: black;">Scientific Reports</a> </i> &nbsp;
Here, we report on a rapid 3D numeric simulation framework that can be used to predict focal spot characteristics prior to the application of ultrasound.  ...  By comparing with magnetic resonance proton resonance frequency shift thermometry (MR thermometry) data acquired during treatments of essential tremor, we verified that our simulation framework can be  ...  Acknowledgements This work was supported by NIH R01 MH111825, Stanford Bio-X, and the Siebel Scholars Foundation. We thank P. Ye for many valuable discussions and J.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-019-43775-6">doi:10.1038/s41598-019-43775-6</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31138821">pmid:31138821</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6538644/">pmcid:PMC6538644</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ykq2cimjgjchhji4bdlibnaaeq">fatcat:ykq2cimjgjchhji4bdlibnaaeq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191116063648/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6538644&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d5/03/d503241ceb04e74ac52ea6e87840ddcc68daa597.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41598-019-43775-6"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6538644" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Simulations of amphiphilic fluids using mesoscale lattice-Boltzmann and lattice-gas methods

P.J Love, M Nekovee, P.V Coveney, J Chin, N González-Segredo, J.M.R Martin
<span title="">2003</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wfenstutwram7ghf2w6rgf5gyu" style="color: black;">Computer Physics Communications</a> </i> &nbsp;
We also discuss the application and use of novel computational steering techniques for the more efficient utilisation of high performance computing resources.  ...  Both models require parallel implementation and deployment on large scale parallel computing resources in order to achieve reasonable simulation times for three-dimensional models.  ...  Computing Centre (particularly Mario Antonioletti), the National Computational Science Alliance in Illinois, USA, Boston University Center for Computational Science, CSAR, and Manchester Visualisation  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s0010-4655(03)00200-5">doi:10.1016/s0010-4655(03)00200-5</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/eji4nlssmzbhpok3lyjmlb57iy">fatcat:eji4nlssmzbhpok3lyjmlb57iy</a> </span>
<a target="_blank" rel="noopener" href="https://archive.org/download/arxiv-cond-mat0212148/cond-mat0212148.pdf" title="fulltext PDF download [not primary version]" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> File Archive [PDF] <span style="color: #f43e3e;">&#10033;</span> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s0010-4655(03)00200-5"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Enabling interactive and collaborative oil reservoir simulations on the Grid

Manish Parashar, Rajeev Muralidhar, Wonsuck Lee, Dorian Arnold, Jack Dongarra, Mary Wheeler
<span title="">2005</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/o454xj4tdjfllm3oragfkdrffi" style="color: black;">Concurrency and Computation</a> </i> &nbsp;
environmental flow simulations in computational Grid environments.  ...  The project builds on three independent research efforts: (1) the IPARS oil reservoir and environmental flow simulation framework; (2) the NetSolve Grid engine; and (3) the Discover Grid-based computational  ...  Specifically, we first describe how the IPARS simulator is enhanced by Discover to enable runtime simulation analysis, interaction and collaboration.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cpe.899">doi:10.1002/cpe.899</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/c4gev7nr5vhythi2iuh4vyckeq">fatcat:c4gev7nr5vhythi2iuh4vyckeq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20060113230254/http://www.caip.rutgers.edu:80/TASSL/Papers/discover-ipars-ccpe-si-05.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9d/7d/9d7dc168d1f8dafc1e6cf63ac95e40f0852db1d8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cpe.899"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

Simulating Heterogeneous Crowds with Interactive Behaviors [article]

Mubbasir Kappadia, Nuria Pelechano, Stephen Guy, Jan Allbeck, Yiorgos Chrysanthou
<span title="">2014</span> <i title="The Eurographics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xgoygnj3knbt3jsqqs5uay37ba" style="color: black;">Eurographics State of the Art Reports</a> </i> &nbsp;
This course focuses on heterogeneous crowd simulation for interactive applications and will describe state of the art methods to simulate large groups of agents exhibiting a variety of behaviors, appearances  ...  Over the last decade there has been a large amount of work towards trying to simulate crowds for different applications, such as movies, video games, training, and evacuations.  ...  in the automated analysis of steering algorithms.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/egt.20141016">doi:10.2312/egt.20141016</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/s32fv26mrbemrjkkowxycojpcm">fatcat:s32fv26mrbemrjkkowxycojpcm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220113044148/https://diglib.eg.org/xmlui/bitstream/handle/10.2312/egt.20141016.t1/t1.pdf;jsessionid=BB3BAF0E683FC0AE46B024C31A02FBCF?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0c/53/0c53955301f07e83db5b6d7fca07ee593eb6d6fa.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/egt.20141016"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

HIFUtk: Visual Analytics for High Intensity Focused Ultrasound Simulation [article]

Daniela Modena, Edmond Van Dijk, Dragan Bošnacki, Huub M. M. Ten Eikelder, Michel A. Westenberg
<span title="">2017</span> <i title="The Eurographics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nz3bgc5hjvedbe7julfimhidve" style="color: black;">Eurographics Workshop on Visual Computing for Biomedicine</a> </i> &nbsp;
We illustrate the use of HIFUtk by applying HIFU to a rabbit bone model, focusing on two common research questions related to HIFU.  ...  We introduce HIFUtk, a visual analytics environment to define, perform, and visualize HIFU simulations.  ...  , simulation, data and analysis.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/vcbm.20171239">doi:10.2312/vcbm.20171239</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/vcbm/ModenaDBEW17.html">dblp:conf/vcbm/ModenaDBEW17</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hemcofbjnrcbviccz7urmgc5pi">fatcat:hemcofbjnrcbviccz7urmgc5pi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220117171454/https://diglib.eg.org/xmlui/bitstream/handle/10.2312/vcbm20171239/073-082.pdf;jsessionid=F65047BB676805D8C99F58658D339B44?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/45/20/4520ea1e5e70cd514f43ea2bec55176c0c07cbdc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/vcbm.20171239"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Toward High Fidelity Materials Property Prediction from Multiscale Modeling and Simulation

Maxime Vassaux, Robert C. Sinclair, Robin A. Richardson, James L. Suter, Peter V. Coveney
<span title="2019-10-04">2019</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lchpm4s36rf43ng6rky6zssrqy" style="color: black;">Advanced Theory and Simulations</a> </i> &nbsp;
With the advent of ever more powerful computers, rapid, reliable, and reproducible computer simulations are beginning to represent a feasible alternative.  ...  The current approach to materials discovery and design remains dominated by experimental testing, frequently based on little more than trial and error.  ...  for non-bonded interactions fail.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/adts.201900122">doi:10.1002/adts.201900122</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vk5ziwtqkrh4jkxs26fer74mya">fatcat:vk5ziwtqkrh4jkxs26fer74mya</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220106222111/https://hal.archives-ouvertes.fr/hal-03452476/file/adts.201900122.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a9/22/a922f3bd03bf1269a4e898e662e190fd39935b0d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/adts.201900122"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

Molecular dynamics simulations of potassium channels

Carmen Domene
<span title="2007-01-01">2007</span> <i title="Walter de Gruyter GmbH"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/bj6taoaxorgo5b7n7oazjz2hji" style="color: black;">Open Chemistry</a> </i> &nbsp;
This review aims at highlighting some of the work in the area of potassium channels and molecular dynamics simulations where numerous fundamental questions about the structure, function, folding and dynamics  ...  AbstractDespite the complexity of ion-channels, MD simulations based on realistic all-atom models have become a powerful technique for providing accurate descriptions of the structure and dynamics of these  ...  Simulation studies combined with principal component analysis (PCA) [94] [97] attempted to generate open-state models by steered simulations.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2478/s11532-007-0028-6">doi:10.2478/s11532-007-0028-6</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ureyqplb3zbwjoiv2hiybll3hu">fatcat:ureyqplb3zbwjoiv2hiybll3hu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180726181037/https://www.degruyter.com/downloadpdf/j/chem.2007.5.issue-3/s11532-007-0028-6/s11532-007-0028-6.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e0/c4/e0c402edf1f458e932f6c9d5a9455fbe8b3d341e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2478/s11532-007-0028-6"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

The philosophy of simulation: hot new issues or same old stew?

Roman Frigg, Julian Reiss
<span title="2008-12-04">2008</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/munzfrczajgrfktmdt7fobcory" style="color: black;">Synthese</a> </i> &nbsp;
Computer simulations are an exciting tool that plays important roles in many scientific disciplines. This has attracted the attention of a number of philosophers of science.  ...  The main tenor in this literature is that computer simulations not only constitute interesting and powerful new science, but that they also raise a host of new philosophical issues.  ...  An example of a simulation considered by Morgan contains a computer-generated model of cow bones as its core.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11229-008-9438-z">doi:10.1007/s11229-008-9438-z</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dkg6gnujrfhljc26jkoey7lzea">fatcat:dkg6gnujrfhljc26jkoey7lzea</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20140617161119/http://www.jreiss.org:80/papers/Synthese%20stew.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/28/1e/281e47f4c2df29276aad40119d10a87acbd56fa6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11229-008-9438-z"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

A novel medical image data-based multi-physics simulation platform for computational life sciences

E. Neufeld, D. Szczerba, N. Chavannes, N. Kuster
<span title="2013-02-21">2013</span> <i title="The Royal Society"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/d7whzd2jibasbkf6j6dw5axlae" style="color: black;">Interface Focus</a> </i> &nbsp;
Subject Areas: computational biology, biomedical engineering Simulating and modelling complex biological systems in computational life sciences requires specialized software tools that can perform medical  ...  One contribution of 25 to a Theme Issue 'The virtual physiological human: integrative approaches to computational biomedicine'.  ...  Post-processing, optimization and analysis The simulation platform is complemented by post-processing tools for visualization and analysis, and by an optimization and sensitivity analysis framework.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1098/rsfs.2012.0058">doi:10.1098/rsfs.2012.0058</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24427518">pmid:24427518</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3638470/">pmcid:PMC3638470</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/w34zkidepncjnjpvnecqm5e5je">fatcat:w34zkidepncjnjpvnecqm5e5je</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809050400/http://rsfs.royalsocietypublishing.org/content/royfocus/3/2/20120058.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ad/cf/adcff045a7fbf707f11f9e428c6d3a4399ab9024.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1098/rsfs.2012.0058"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638470" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The philosophy of simulation: hot new issues or same old stew?

Roman Frigg, Julian Reiss
<span title="2009-06-25">2009</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/munzfrczajgrfktmdt7fobcory" style="color: black;">Synthese</a> </i> &nbsp;
Computer simulations are an exciting tool that plays important roles in many scientific disciplines. This has attracted the attention of a number of philosophers of science.  ...  The main tenor in this literature is that computer simulations not only constitute interesting and powerful new science, but that they also raise a host of new philosophical issues.  ...  An example of a simulation considered by Morgan contains a computer-generated model of cow bones as its core.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11229-009-9577-x">doi:10.1007/s11229-009-9577-x</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/36xqtu7r3ndhfgrcoun7jca2me">fatcat:36xqtu7r3ndhfgrcoun7jca2me</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170813023809/http://jreiss.org/papers/Simulations_August_2007.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/5d/dd5dc03d82a7876ded297458ad06deccce7ae1b6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11229-009-9577-x"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>
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