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Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens

Marc Bruckskotten, Mario Looso, Richard Reinhardt, Thomas Braun, Thilo Borchardt
2011 Nucleic Acids Research  
Via a user-friendly interface Newt-omics allows access to a huge set of molecular data without the need for prior bioinformatical expertise.  ...  Newt-omics is a transcript-centred database, based on an Expressed Sequence Tag (EST) data set from the newt, covering 50 000 Sanger sequenced transcripts and a set of highdensity microarray data, generated  ...  ACKNOWLEDGEMENTS We wish to thank Sven Klages from the Max Planck Institute for Molecular Genetics Berlin for the initial sequence processing and his helpful suggestions concerning annotation of data.  ... 
doi:10.1093/nar/gkr873 pmid:22039101 pmcid:PMC3245081 fatcat:fso4zwzwnngt7f6bi7crkhvo5i

A Transcriptome for the Study of Early Processes of Retinal Regeneration in the Adult Newt, Cynops pyrrhogaster

Kenta Nakamura, Md. Rafiqul Islam, Miyako Takayanagi, Hirofumi Yasumuro, Wataru Inami, Ailidana Kunahong, Roman M. Casco-Robles, Fubito Toyama, Chikafumi Chiba, Panagiotis A. Tsonis
2014 PLoS ONE  
Retinal regeneration in the adult newt is a useful system to uncover essential mechanisms underlying the regeneration of body parts of this animal as well as to find clues to treat retinal disorders such  ...  Here, to facilitate the study of early processes of retinal regeneration, we provide a de novo assembly transcriptome and inferred proteome of the Japanese fire bellied newt (Cynops pyrrhogaster), which  ...  Acknowledgments The authors thank Hokkaido System Science (Sapporo, Hokkaido, Japan) and BGI Japan (Kobe KIMEC Center, Japan) for assistance with initial data analyses, and all members of the Japan Newt  ... 
doi:10.1371/journal.pone.0109831 pmid:25290450 pmcid:PMC4188609 fatcat:b3x37gq2gne7hil2jwldyvvqu4