Filters








8,903 Hits in 3.2 sec

New developments in the InterPro database

N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, V. Buillard, L. Cerutti, R. Copley, E. Courcelle, U. Das (+33 others)
<span title="2007-01-03">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files.  ...  The latter two new member databases have been integrated since the last publication in this journal.  ...  InterPro is funded in part by the MRC e-family grant number G0100305. A large proportion of HMMERbased calculations are performed on the IBMP690 Supercomputer at HLRN.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkl841">doi:10.1093/nar/gkl841</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17202162">pmid:17202162</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1899100/">pmcid:PMC1899100</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ditkwsqd5zctdb5wgxs36xhmum">fatcat:ditkwsqd5zctdb5wgxs36xhmum</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151004142753/http://www.letunic.com/publications/17202162.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/73/e8/73e87e648619839a9ae8cb66b22a8e0844baf6ef.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkl841"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899100" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

InterPro in 2011: new developments in the family and domain prediction database

S. Hunter, P. Jones, A. Mitchell, R. Apweiler, T. K. Attwood, A. Bateman, T. Bernard, D. Binns, P. Bork, S. Burge, E. de Castro, P. Coggill (+45 others)
<span title="2012-05-01">2012</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Herein we give an overview of new developments in the database and its associated software since 2009, including updates to  ...  InterPro has utility in the large-scale analysis of whole genomes and metagenomes, as well as in characterizing individual protein sequences.  ...  NEW FEATURES IN INTERPRO Updates to database content InterPro curators continue to integrate new entries into the resource.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gks456">doi:10.1093/nar/gks456</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3378909/">pmcid:PMC3378909</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/oqmafftblfcmdgh4a3i4nzqpzu">fatcat:oqmafftblfcmdgh4a3i4nzqpzu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809130739/http://letunic.com/publications/22096229.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ca/7b/ca7bdf24d737de50382ad64be86ada1e43e9cc1a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gks456"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3378909" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

InterPro in 2011: new developments in the family and domain prediction database

S. Hunter, P. Jones, A. Mitchell, R. Apweiler, T. K. Attwood, A. Bateman, T. Bernard, D. Binns, P. Bork, S. Burge, E. de Castro, P. Coggill (+38 others)
<span title="2011-11-16">2011</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
NEW FEATURES IN INTERPRO Updates to database content InterPro curators continue to integrate new entries into the resource.  ...  A new user interface With the aim of improving the InterPro user experience, a new Web-based interface has been developed.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkr948">doi:10.1093/nar/gkr948</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22096229">pmid:22096229</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3245097/">pmcid:PMC3245097</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/awtdl7qobjhnveofe7jxno6ju4">fatcat:awtdl7qobjhnveofe7jxno6ju4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201108063233/https://hal.inrae.fr/hal-02652188/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/89/c1/89c1fab1d6752729dfa84d989f84973d44c07320.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkr948"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245097" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The InterPro protein families database: the classification resource after 15 years

Alex Mitchell, Hsin-Yu Chang, Louise Daugherty, Matthew Fraser, Sarah Hunter, Rodrigo Lopez, Craig McAnulla, Conor McMenamin, Gift Nuka, Sebastien Pesseat, Amaia Sangrador-Vegas, Maxim Scheremetjew (+24 others)
<span title="2014-11-26">2014</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The InterPro database (http://www.ebi.ac.uk/ interpro/) is a freely available resource that can be used to classify sequences into protein families and to predict the presence of important domains and  ...  InterPro integrates these signatures, capitalizing on the respective strengths of the individual databases, to produce a powerful protein classification resource.  ...  A new domain architecture search tool has been developed and made available via the website (http://www.ebi.ac.uk/interpro/search/ domain-organisation); this allows the InterPro database to be searched  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gku1243">doi:10.1093/nar/gku1243</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25428371">pmid:25428371</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4383996/">pmcid:PMC4383996</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4asvzb32obgwhlvdkrfhiokvme">fatcat:4asvzb32obgwhlvdkrfhiokvme</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190225190258/http://pdfs.semanticscholar.org/635f/856b723426d42ab697d642f73a95b9b93ee8.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/63/5f/635f856b723426d42ab697d642f73a95b9b93ee8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gku1243"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383996" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The InterPro Database, 2003 brings increased coverage and new features

N. J. Mulder
<span title="2003-01-01">2003</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one comprehensive  ...  NEW FEATURES Several new features have been introduced into InterPro since the last publication in this journal in 2000.  ...  In 1999, the major signature databases PROSITE (1), PRINTS (2), Pfam (3) and ProDom (4) formed a Consortium and agreed to integrate their data into a new database that became known as InterPro (5) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkg046">doi:10.1093/nar/gkg046</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12520011">pmid:12520011</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC165493/">pmcid:PMC165493</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fy5hcc4yxvgtpgniyqtsnwmqvm">fatcat:fy5hcc4yxvgtpgniyqtsnwmqvm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808054855/http://cegg.unige.ch/system/files/315.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f0/ef/f0ef01f4dcd07b84387a39eee9548d184109e155.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkg046"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC165493" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

InterPro, progress and status in 2005

N. J. Mulder
<span title="2004-12-17">2004</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
InterPro covers over 78% of all proteins in the Swiss-Prot and TrEMBL components of UniProt. The database is available for text-and sequencebased searches via a webserver (  ...  One of the new match views is the InterPro Domain Architecture view, which shows the domain composition of protein matches.  ...  ACKNOWLEDGEMENTS The InterPro project is supported by the ProFuSe grant (number QLG2-CT-2000-00517) and the Integr8 grant (number QLRI-CT-2001000015) of the European Commission.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki106">doi:10.1093/nar/gki106</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15608177">pmid:15608177</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC540060/">pmcid:PMC540060</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ykhpocbakfck3elxzhjb7z34rm">fatcat:ykhpocbakfck3elxzhjb7z34rm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170812232546/http://supfam.mrc-lmb.cam.ac.uk/bioinformatics/people/julian_gough/publications/mulder_nar_2005.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d5/f0/d5f06f724eee31fde3c1c90091a4d3627f65c8bf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki106"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC540060" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The InterPro protein families and domains database: 20 years on

Matthias Blum, Hsin-Yu Chang, Sara Chuguransky, Tiago Grego, Swaathi Kandasaamy, Alex Mitchell, Gift Nuka, Typhaine Paysan-Lafosse, Matloob Qureshi, Shriya Raj, Lorna Richardson, Gustavo A Salazar (+21 others)
<span title="2020-11-06">2020</span> <i title="Oxford University Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Here, we report the status of InterPro (version 81.0) in its 20th year of operation, and its associated software, including updates to database content, the release of a new website and REST API, and performance  ...  Founded in 1999, InterPro has become one of the most widely used resources for protein family annotation.  ...  ACKNOWLEDGEMENTS The authors would like to thank former members of the InterPro team: Sara El-Gebali, Matthew Fraser, Aurélien Luciani, Sebastien Pesseat, Simon Potter, Neil Rawlings, Amaia Sangrador-Vegas  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa977">doi:10.1093/nar/gkaa977</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33156333">pmid:33156333</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7778928/">pmcid:PMC7778928</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vfs7k3dxr5bcpbpvxbptj6r46m">fatcat:vfs7k3dxr5bcpbpvxbptj6r46m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210427095413/https://discovery.ucl.ac.uk/id/eprint/10115192/1/gkaa977.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b7/47/b74764d7ba701d38149f71242600058a111ef1b7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa977"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778928" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

InterPro in 2017—beyond protein family and domain annotations

Robert D. Finn, Teresa K. Attwood, Patricia C. Babbitt, Alex Bateman, Peer Bork, Alan J. Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft (+35 others)
<span title="2016-11-29">2016</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Here, we report recent developments with InterPro and its associated software, in-cluding the addition of two new databases (SFLD and CDD), and the functionality to include residue-level annotation and  ...  These developments enrich the annotations provided by In-terPro, increase the overall number of residues annotated and allow more specific functional inferences.  ...  New protein family member databases The constituent databases of InterPro have remained fixed for the last 7 years (see Figure 2 ), and have changed little in the last decade.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkw1107">doi:10.1093/nar/gkw1107</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27899635">pmid:27899635</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5210578/">pmcid:PMC5210578</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wa7z5pgpuffnrh5bf5ycimw7kq">fatcat:wa7z5pgpuffnrh5bf5ycimw7kq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501233042/http://udspace.udel.edu/bitstream/handle/19716/21353/InterPro%20in%202017%20beyond%20protein%20family%20and%20domain%20annotations_1492792560T0699.pdf;jsessionid=B665127B9705876C279C9E8BC8E6E152?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/02/32/023201ee6bb05e9d602d56ac5620db60849af1a4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkw1107"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210578" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

InterPro: the integrative protein signature database

S. Hunter, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, U. Das, L. Daugherty, L. Duquenne, R. D. Finn, J. Gough (+26 others)
<span title="2009-01-01">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
NEW FEATURES IN InterPro Annotation InterPro curators continue to integrate new signatures from member databases into entries.  ...  drive future database development.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkn785">doi:10.1093/nar/gkn785</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18940856">pmid:18940856</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2686546/">pmcid:PMC2686546</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6ehhtr3amzazll5wha5itvjzba">fatcat:6ehhtr3amzazll5wha5itvjzba</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190505103934/https://hal.archives-ouvertes.fr/hal-01214141/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/01/71/0171c4a0b964c57ee2f37d7e6b7a4f8b1202be97.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkn785"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686546" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

InterPro--an integrated documentation resource for protein families, domains and functional sites

R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, E. Birney, M. Biswas, P. Bucher, L. Cerutti, F. Corpet, M. D. R. Croning, R. Durbin, L. Falquet (+16 others)
<span title="2000-12-01">2000</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
Motivation: InterPro is a new integrated documentation resource for protein families, domains and functional sites, developed initially as a means of rationalising the complementary efforts of the PROSITE  ...  Each InterPro entry lists all the matches against SWISS-PROT and TrEMBL (more than 1 000 000 hits from 264 333 different proteins out of 384 572 in SWISS-PROT and TrEMBL).  ...  Acknowledgements The InterPro project is supported by grant number BIO4-CT98-0052 of the European Commission. TKA is a Royal Society University Research Fellow.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/16.12.1145">doi:10.1093/bioinformatics/16.12.1145</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11159333">pmid:11159333</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zz6c5bhuwbhlfofasde65zj7ku">fatcat:zz6c5bhuwbhlfofasde65zj7ku</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20061014211812/http://bioinformatics.oxfordjournals.org:80/cgi/reprint/16/12/1145.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/68/bc/68bc9b7444ca370abdc9248637e08c05fa670151.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/16.12.1145"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

InterPro: An integrated documentation resource for protein families, domains and functional sites

<span title="2002-01-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/op7ztx4fhvairowgqifu7dnvsi" style="color: black;">Briefings in Bioinformatics</a> </i> &nbsp;
In recognition of this, InterPro was developed as an integrated documentation resource for protein families, domains and functional sites, to rationalise the complementary efforts of the individual protein  ...  The exponential increase in the submission of nucleotide sequences to the nucleotide sequence database by genome sequencing centres has resulted in a need for rapid, automatic methods for classification  ...  Acknowledgements The InterPro project is supported by the ProFuSe grant (number QLG2-CT-2000-00517) of the European Commission.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/3.3.225">doi:10.1093/bib/3.3.225</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12230031">pmid:12230031</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2igbmarmcjbpfphuwf6l7ny4cy">fatcat:2igbmarmcjbpfphuwf6l7ny4cy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151004143258/http://www.letunic.com/publications/12230031.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b6/3a/b63a39f7994e276e872b82edf8ba58a5356577bd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/3.3.225"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

The InterPro BioMart: federated query and web service access to the InterPro Resource

P. Jones, D. Binns, C. McMenamin, C. McAnulla, S. Hunter
<span title="2011-07-23">2011</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
Acknowledgements The authors would particularly like to acknowledge the continuing support of the InterPro Consortium member databases and the support of the BioMart development team who have given invaluable  ...  guidance and assistance with constructing the InterPro BioMart.  ...  It is intended to federate the InterPro BioMart with the new UniParc BioMart that is under development at the EBI.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/bar033">doi:10.1093/database/bar033</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21785143">pmid:21785143</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3170169/">pmcid:PMC3170169</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gj6c52ahdnambl63ykgg6qe7ti">fatcat:gj6c52ahdnambl63ykgg6qe7ti</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20111111103218/http://database.oxfordjournals.org.ezproxy.lib.utah.edu/content/2011/bar033.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/20/95/2095d58de8d3a559c8449cd35a225342fe09114a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/bar033"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170169" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations

Amaia Sangrador-Vegas, Alex L. Mitchell, Hsin-Yu Chang, Siew-Yit Yong, Robert D. Finn
<span title="">2016</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.  ...  However, diverse data-driven events can affect the stability of annotations in both primary protein sequence databases and the protein family databases that are built upon the sequence databases and used  ...  Case 2: new and changed sequences in the UniProtKB database Changes in InterPro annotation can also arise as a result of updates to the UniProtKB sequence database.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baw027">doi:10.1093/database/baw027</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26994912">pmid:26994912</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4799721/">pmcid:PMC4799721</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lwve4cepezbcvi6t2k6odynq4u">fatcat:lwve4cepezbcvi6t2k6odynq4u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191101004922/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4799721&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8d/ae/8dae297a492703adbba9d72e6a87624fcef787aa.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baw027"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4799721" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

R. Apweiler
<span title="2001-01-01">2001</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Each InterPro entry lists all the matches against SWISS-PROT and TrEMBL (more than 1 000 000 hits from 462 500 proteins in SWISS-PROT and TrEMBL).  ...  InterPro is an integrated documentation resource for protein families, domains and functional sites, which amalgamates the efforts of the PROSITE, PRINTS, Pfam and ProDom database projects.  ...  ACKNOWLEDGEMENTS The InterPro project is supported by grant number BIO4-CT98-0052 of the European Commission. T.K.A. is a Royal Society University Research Fellow.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/29.1.37">doi:10.1093/nar/29.1.37</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11125043">pmid:11125043</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC29841/">pmcid:PMC29841</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ft4lb3l2zjhnph2ll42i3jnz3e">fatcat:ft4lb3l2zjhnph2ll42i3jnz3e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190503023303/https://hal.archives-ouvertes.fr/hal-01213150/file/2001_Apweiler_Nucl.%20Acids%20Res_%7BFE93CC45-5E0A-45AC-89A6-8202934C3938%7D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5f/ad/5fad7ef395dbdada53aebafb9b332b6b4b12c394.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/29.1.37"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC29841" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The EBI SRS server--recent developments

E. M. Zdobnov, R. Lopez, R. Apweiler, T. Etzold
<span title="2002-02-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
One of the latest additions to the EBI SRS server is the InterPro database -Integrated Resource of Protein Domains and Functional Sites.  ...  It is a central resource for molecular biology data as well as a reference server for the latest developments in data integration.  ...  InterPro & XML One of the latest additions to the EBI SRS server is the InterPro database (The InterPro Consortium 2000).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/18.2.368">doi:10.1093/bioinformatics/18.2.368</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11847095">pmid:11847095</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gb2p2ulgpbaxnnkkklfuc6i4ra">fatcat:gb2p2ulgpbaxnnkkklfuc6i4ra</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20010614114529/http://www.ebi.ac.uk:80/swissprot/Publications/ebisrs.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b9/e6/b9e632ef40f7e5fcd3f8c37b02bad6b9856acd1f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/18.2.368"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>
&laquo; Previous Showing results 1 &mdash; 15 out of 8,903 results