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Ten Years of Neuroinformatics

Erik De Schutter, Giorgio A. Ascoli, David N. Kennedy
2012 Neuroinformatics  
What looked like a very promising subfield, the neuroinformatics of neural genetics, has disappeared completely from the journal (initially at 11 %), maybe because it is not distinct enough from bioinformatics  ...  This issue closes the tenth volume of Neuroinformatics and in this editorial we will present a brief overview of how the journal evolved over its first decade.  ... 
doi:10.1007/s12021-012-9162-1 pmid:22987113 fatcat:nd7nv7z4dngzdngak5xo6f43fi

We Must Invest in Applied Knowledge of Computational Neurosciences and Neuroinformatics as an Important Future in Malaysia: The Malaysian Brain Mapping Project

Putra Sumari, Zamzuri Idris, Jafri Malin Abdullah
2017 Malaysian Journal of Medical Sciences  
We must invest in applied knowledge of computational neurosciences and neuroinformatics as an important future in Malaysia: the Malaysian brain mapping project.  ...  This is necessary for the efficient processing of high-volume datasets, especially when a popular bottom-up explorative data analysis (8) approach is used.  ...  and the International Neuroinformatics Coordinating Facility (INCF) (5) .  ... 
doi:10.21315/mjms2017.24.1.1 pmid:28381924 pmcid:PMC5345998 fatcat:32kfytxo4rbknkk2yvrhskmbo4

Teaching with Big Data: Report from the 2016 Society for Neuroscience Teaching Workshop

William Grisham, Joshua C Brumberg, Terri Gilbert, Linda Lanyon, Robert W Williams, Richard Olivo
2017 Journal of Undergraduate Neuroscience Education  
The feasibility of offering neuroinformatics programs at primarily undergraduate institutions was also discussed.  ...  Neuroinformatics is a subfield of neuroscience that deals with data utilizing analytical tools and computational models.  ...  Developed by INCF and partners, Training Space is an online hub that links neuroinformatics training resources. (A) Landing page. (B) Sample lecture content. Figure 11 . 11 KnowledgeSpace.  ... 
pmid:29371844 pmcid:PMC5777841 fatcat:vqcghemae5cibaot23ym3cbo4i

The CAMH Neuroinformatics Platform: A Hospital-Focused Brain-CODE Implementation

David J Rotenberg, Qing Chang, Natalia Potapova, Andy Wang, Marcia Hon, Marcos Sanches, Nikola Bogetic, Nathan Frias, Tommy Liu, Brendan Behan, Rachad El-Badrawi, Stephen C Strother (+11 others)
2018 Frontiers in Neuroinformatics  
of mental illness have been enriched by the advent and maturation of neuroimaging technologies and the rapid pace and increased affordability of molecular sequencing techniques, however, the increased volume  ...  multi-modal data integration for the study of mental illness, the Centre for Addiction and Mental Health (CAMH) constructed a centralized data capture, visualization and analytics environment-the CAMH Neuroinformatics  ...  Funding for the Neuroinformatics Platform provided by the Government of Ontario.  ... 
doi:10.3389/fninf.2018.00077 pmid:30459587 pmcid:PMC6232622 fatcat:ecbxaeuqtjhjlcqylhlkjb5qae

Ethical Issues in Neuroinformatics [chapter]

Athanasios Alexiou, Georgia Theocharopoulou, Panayiotis Vlamos
2013 IFIP Advances in Information and Communication Technology  
Neuroinformatics can enhance the development of systems that mimic brain storage and retrieval of information.  ...  These areas of research are important for the integration and analysis of increasingly large-volume, high-dimensional, and fine-grain experimental data.  ...  ethical issues of human data sharing: • The federal human subject protection law in the United States mandates that all identifying information be removed from data prior to submission for sharing [11  ... 
doi:10.1007/978-3-642-41142-7_71 fatcat:g6bkr7q4uvd2zkxo7ot5l6k5ly

Neurorobotic Models in Neuroscience and Neuroinformatics

Anil K. Seth, Olaf Sporns, Jeffrey L. Krichmar
2005 Neuroinformatics  
A novel time-series analysis technique was employed, based on Volume 3, 2005_________________________________________________________________ Neuroinformatics Neurorobotic Models in Neuroscience and  ...  The workshop was arranged around 11 invited presentations in a single day, with plenty of time reserved for informal discussion.  ... 
doi:10.1385/ni:3:3:167 pmid:16077157 fatcat:w77jghnj45hgzjxljn6notymye

Corrigendum: Software for Brain Network Simulations: A Comparative Study

Ruben A. Tikidji-Hamburyan, Vikram Narayana, Zeki Bozkus, Tarek A. El-Ghazawi
2018 Frontiers in Neuroinformatics  
Frontiers in Neuroinformatics | www.frontiersin.org May 2018 | Volume 12 | Article 22  ...  Neuroinform. 11:46. doi: 10.3389/fninf.2017.00046 We found an inaccuracy in the benchmark test for the NEST simulator in Case Study 2 of the article.  ... 
doi:10.3389/fninf.2018.00022 pmid:29743871 pmcid:PMC5938367 fatcat:4if3g62mondnpos4yqavs5ruxu

Turning the Tide of Data Sharing

Giorgio A. Ascoli
2019 Neuroinformatics  
Neuroinformatics, 4(3), 213-6. 9 Kennedy, D.N. (2017). The Information Sharing Statement Grows Some Teeth. Neuroinformatics, 15(2), 113-114. 10 Ascoli, G.A. (2007).  ...  pioneering position of our journal 9 ; exemplary success stories of data reusage that amplified the impact of the original work 10 ; greater name recognition and community trust in larger resources 11  ... 
doi:10.1007/s12021-019-09437-8 pmid:31612297 pmcid:PMC6858586 fatcat:ns7kbnkwbve5leiqbh3nkfdjci

Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion

Inge A. Mulder, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Nathalie Rieff, Marieke J. H. Wermer, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg
2017 Frontiers in Neuroinformatics  
Therefore, in the present study, a fully automated approach was developed to analyze longitudinal MRI data for quantification of ischemic lesion volume progression in the mouse brain.  ...  Frontiers in Neuroinformatics | www.frontiersin.org 8 January 2017 | Volume 11 | Article 3 January 2017 | Volume 11 | Article 3 Frontiers in Neuroinformatics | www.frontiersin.org  ...  Figure 5E shows that our method is Frontiers in Neuroinformatics | www.frontiersin.org 9 January 2017 | Volume 11 | Article 3 Frontiers in Neuroinformatics | www.frontiersin.org 10 January 2017 | Volume  ... 
doi:10.3389/fninf.2017.00003 pmid:28197090 pmcid:PMC5281583 fatcat:6azfdoaaafhwtnl2kwedckym6m

High-throughput neuro-imaging informatics

Michael I. Miller, Andreia V. Faria, Kenichi Oishi, Susumu Mori
2013 Frontiers in Neuroinformatics  
Keywords: neuro-imaging, neuroinformatics, computational anatomy, functional imaging Frontiers in Neuroinformatics www.frontiersin.org December 2013 | Volume 7 | Article 31 | 1 NEUROINFORMATICS Miller  ...  Frontiers in Neuroinformatics www.frontiersin.org  ...  Frontiers in Neuroinformatics www.frontiersin.org December 2013 | Volume 7 | Article 31 | 14 Frontiers in Neuroinformatics December 2013 | Volume 7 | Article 31 | 16  ... 
doi:10.3389/fninf.2013.00031 pmid:24381556 pmcid:PMC3865387 fatcat:64agb3wv2nhy3lewbgsmucneca

Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury

S. Y. Matthew Goh, Andrei Irimia, Carinna M. Torgerson, John D. Van Horn
2014 Frontiers in Neuroinformatics  
Given this perspective, we here discuss the neuroinformatics challenges for TBI neuroimaging analysis in the context of structural, connectivity, and functional paradigms.  ...  | 9 February 2014 | Volume 8 | Article 19 | 10 February 2014 | Volume 8 | Article 19 | 11 February 2014 | Volume 8 | Article 19 | 12  ...  in Neuroinformatics www.frontiersin.org February 2014 | Volume 8 | Article 19 | 5 Frontiers in Neuroinformatics www.frontiersin.org February 2014 | Volume 8 | Article 19 | 6 Frontiers in Neuroinformatics  ... 
doi:10.3389/fninf.2014.00019 pmid:24616696 pmcid:PMC3935464 fatcat:acoj4l4sbrecfnn4j3zg2eiyzy

Magia: Robust Automated Image Processing and Kinetic Modeling Toolbox for PET Neuroinformatics

Tomi Karjalainen, Jouni Tuisku, Severi Santavirta, Tatu Kantonen, Marco Bucci, Lauri Tuominen, Jussi Hirvonen, Jarmo Hietala, Juha O. Rinne, Lauri Nummenmaa
2020 Frontiers in Neuroinformatics  
ACKNOWLEDGMENTS This manuscript includes work in-part from a Thesis ''Magia: Robust Automated Modeling And Image Processing Platform For Pet Neuroinformatics'' by Santavirta (Santavirta, 2018) .  ...  www.fil.ion.ucl.ac.uk/spm/ 3 https://surfer.nmr.mgh.harvard.edu/ 4 http://aivo.utu.fi Frontiers in Neuroinformatics | www.frontiersin.org February 2020 | Volume 14 | Article 3 http://turkupetcentre.fi  ...  The ICC for reference region volumes were moderate to good (0.74. . .0.83) for all tracers except [ 11 C]MADAM (ICC = 0.46).  ... 
doi:10.3389/fninf.2020.00003 pmid:32116627 pmcid:PMC7012016 fatcat:yy66ho65sfhbpavrcsrgdqix2e

Proposed Training to Meet Challenges of Large-Scale Data in Neuroscience

William Grisham, Barbara Lom, Linda Lanyon, Raddy L. Ramos
2016 Frontiers in Neuroinformatics  
http://visionandchange.org/files/2013/11/aaas-VISchange-web1113.pdf 2 https://mdcune.psych.ucla.edu/ineuro/reports/iNeuro_WorkshopReport_v20160119.pdf Frontiers in Neuroinformatics | www.frontiersin.org  ...  | www.frontiersin.org July 2016 | Volume 10 | Article 28 Frontiers in Neuroinformatics | www.frontiersin.org https://www.incf.org/resources/training 8 http://www.anc.ed.ac.uk/dtc/ 9 http  ... 
doi:10.3389/fninf.2016.00028 pmid:27486398 pmcid:PMC4947577 fatcat:faovuyhhana5fel6qisyepidku

Biological databases and tools for neurological disorders

Muhammad Bello Usman, Shreesh Ojha, Saurabh Kumar Jha, Dinesh Kumar Chellappan, Gaurav Gupta, Sachin Kumar Singh, Kamal Dua, Shubhadeep Roychoudhury, Neeraj Kumar, Firdos Alam Khan, Harish Dureja, Vijay Upadhye (+6 others)
2022 Journal of Integrative Neuroscience  
Neuroinformatics is at the crossroads of neuroscience and information science [9] [10] [11] .  ...  The pool of data is vast and heterogeneous in the field of experimental neuroscience and the integration and analysis of these increasingly large-volume, high-dimensional data sets require Neuroinformatics  ... 
doi:10.31083/j.jin2101041 pmid:35164477 fatcat:tgg45sx4gze4xlt4u3wxheeco4

Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives

Ian Bowman, Shantanu H. Joshi, John D. Van Horn
2012 Frontiers in Neuroinformatics  
We describe the rationale behind INVIZIAN, detail its development, and demonstrate its usage in examining a collection of over 900 T1-anatomical magnetic resonance imaging (MRI) image volumes from across  ...  Volume 6 | Article 11 | 8 Frontiers in Neuroinformatics www.frontiersin.org April 2012 | Volume 6 | Article 11 | 9 April 2012 | Volume 6 | Article 11 | 10 Frontiers in Neuroinformatics  ...  www.frontiersin.org April 2012 | Volume 6 | Article 11 | 11 Frontiers in Neuroinformatics www.frontiersin.org April 2012 | Volume 6 | Article 11 | 12 Frontiers in Neuroinformatics www.frontiersin.org  ... 
doi:10.3389/fninf.2012.00011 pmid:22536181 pmcid:PMC3332235 fatcat:c3mgktgsj5hunlloxunizevqxm
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