Filters








15 Hits in 5.0 sec

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain

Krzysztof J. Gorgolewski, Gael Varoquaux, Gabriel Rivera, Yannick Schwartz, Vanessa V. Sochat, Satrajit S. Ghosh, Camille Maumet, Thomas E. Nichols, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies, Russell A. Poldrack
2016 NeuroImage  
NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. NeuroImage, Elsevier, 2015, 124 (Pt B), pp.  ...  Abstract NeuroVault.org is dedicated to storing outputs of analyses in the form of statistical maps, parcellations and atlases, a unique strategy that contrasts with most neuroimaging repositories that  ...  Acknowledgments We thank the INCF Neuroimaging Data Sharing task force members for their input during several discussions.  ... 
doi:10.1016/j.neuroimage.2015.04.016 pmid:25869863 pmcid:PMC4806527 fatcat:zc5dvapqznbnln6bdslrqp3xly

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain

Krzysztof J. Gorgolewski, Gael Varoquaux, Gabriel Rivera, Yannick Schwarz, Satrajit S. Ghosh, Camille Maumet, Vanessa V. Sochat, Thomas E. Nichols, Russell A. Poldrack, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies
2015 Frontiers in Neuroinformatics  
Here we present NeuroVault-a web based repository that allows researchers to store, share, visualize, and decode statistical maps of the human brain.  ...  NeuroVault is a new resource for researchers interested in conducting meta-and coactivation analyses.  ...  Conclusion In this work we have described NeuroVault-a web-based repository that allows researchers to store, share, visualize, and decode unthresholded statistical maps of the human brain.  ... 
doi:10.3389/fninf.2015.00008 pmid:25914639 pmcid:PMC4392315 fatcat:it5etwkgavdbrgv242txqnmnb4

NeuroVault.org: A web-based repository for collecting and sharing unthresholded statistical maps of the human brain [article]

Krzysztof Jacek Gorgolewski, Gael Varoquaux, Gabriel Rivera, Yannick Schwartz, Satrajit S. Ghosh, Camille Maumet, Vanessa Sochat, Thomas E. Nichols, Russell A. Poldrack, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies
2014 bioRxiv   pre-print
Here we present NeuroVault - a web based repository that allows researchers to store, share, visualize, and decode statistical maps of the human brain.  ...  NeuroVault is a new resource for researchers interested in conducting meta- and coactivation analyses.  ...  Conclusion In this work we have described NeuroVault -a webbased repository that allows researchers to store, share, visualize, and decode unthresholded statistical maps of the human brain.  ... 
doi:10.1101/010348 fatcat:hschxoeebbfd7ax5v4mbjiq6hm

Sharing Voxelwise Neuroimaging Results from Rhesus Monkeys and Other Species with Neurovault

AS Fox, D Holley, PC Klink, SA Arbuckle, C Barnes, J Diedrichsen, SC Kwok, C Kyle, JA Pruszynski, J Seidlitz, X-F Zhou, RA Poldrack (+1 others)
2020 NeuroImage  
Here, we provide an extension of the Neurovault framework to enable sharing of statistical maps and related voxelwise neuroimaging data from other species and template-spaces.  ...  Together, these advances promise to bring neuroimaging data sharing to research in other species, for supplemental data, location-based atlases, and data that would otherwise be relegated to a "file-drawer  ...  Data and code availability All data and code is freely available online. Data is available on Neurovault.org, through the links provided in the manuscript.  ... 
doi:10.1016/j.neuroimage.2020.117518 pmid:33137472 pmcid:PMC7846271 fatcat:jc43zljvnneglifxhfreo4oqzi

The Brain Analysis Library of Spatial maps and Atlases (BALSA) database

David C. Van Essen, John Smith, Matthew F. Glasser, Jennifer Elam, Chad J. Donahue, Donna L. Dierker, Erin K. Reid, Timothy Coalson, John Harwell
2017 NeuroImage  
BALSA Reference is a curated repository of reference data accurately mapped to brain atlas surfaces and volumes, including various types of anatomically and functionally derived spatial maps as well as  ...  We report on a new neuroimaging database, BALSA, that is a repository for extensively analyzed neuroimaging datasets from humans and nonhuman primates. BALSA is organized into two distinct sections.  ...  Acknowledgments We thank Dan Marcus, Rick Herrick, and Will Horton for help in early stages of designing BALSA and Chip Schweiss for valuable technical support. Supported by NIMH grant  ... 
doi:10.1016/j.neuroimage.2016.04.002 pmid:27074495 pmcid:PMC5149446 fatcat:aumxt2bsv5fjthkc7igcfiz7yu

Fine-grain atlases of functional modes for fMRI analysis [article]

Kamalaker Dadi, Antonia Machlouzarides-Shalit, Krzysztof J. Gorgolewski, Demian Wassermann
2020 arXiv   pre-print
of fMRI across sessions and individuals, extraction of resting-state functional-connectomes biomarkers for 2,500 individuals, data compression and meta-analysis over more than 15,000 statistical maps.  ...  For this reason, brain images are typically summarized in a few signals, for instance reducing voxel-level measures with brain atlases or functional modes.  ...  Neurovault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers in Neuroinformatics 9, 8.  ... 
arXiv:2003.05405v1 fatcat:3ed452xtnnfylbvcveixb3hdqa

Standardizing workflows in imaging transcriptomics with the abagen toolbox

Ross D Markello, Aurina Arnatkevičiūtė, Jean-Baptiste Poline, Ben D Fulcher, Alex Fornito, Bratislav Misic
2021 eLife  
Gene expression fundamentally shapes the structural and functional architecture of the human brain.  ...  the influence of gene expression in the human brain.  ...  NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brainhttps://doi.org/10.3389/fninf.2015.00008 Frontiers in Neuroinformatics 9 :8.  ... 
doi:10.7554/elife.72129 pmid:34783653 pmcid:PMC8660024 fatcat:aiq3qj2n4factiujzc55dzywj4

The Human Connectome Project's neuroimaging approach

Matthew F Glasser, Stephen M Smith, Daniel S Marcus, Jesper L R Andersson, Edward J Auerbach, Timothy E J Behrens, Timothy S Coalson, Michael P Harms, Mark Jenkinson, Steen Moeller, Emma C Robinson, Stamatios N Sotiropoulos (+4 others)
2016 Nature Neuroscience  
analyze data using neurobiologically accurate brain parcellations; and (7) share published data via user-friendly databases.  ...  Widespread adoption of this paradigm should accelerate progress in understanding the brain in health and disease.  ...  We thank the other investigators and staff members of the Human Connectome Project consortium for invaluable contributions to data acquisition, analysis, and sharing.  ... 
doi:10.1038/nn.4361 pmid:27571196 fatcat:wwg4h7gmw5eshc5bc3zsmt6zmy

Resources available for autism research in the big data era: a systematic review

Reem Al-jawahiri, Elizabeth Milne
2017 PeerJ  
The aim of this review is to systematically search for all available ASD data resources providing the following data types: phenotypic, neuroimaging, human brain connectivity matrices, human brain statistical  ...  repositories' by key journals, and the findings were translated into a comprehensive list focused on ASD data.  ...  Modulation of mu attenuation to social stimuli in children and adults with 16p11.2  ... 
doi:10.7717/peerj.2880 pmid:28097074 pmcid:PMC5237363 fatcat:tq7scqyke5eqfhfsuxaqsk6wgm

Improving Practices and Inferences in Developmental Cognitive Neuroscience

John C. Flournoy, Nandita Vijayakumar, Theresa W. Cheng, Danielle Cosme, Jessica E. Flannery, Jennifer H. Pfeifer
2020 Developmental Cognitive Neuroscience  
First, we discuss the advantages of working within an exploratory analysis framework, including estimating and reporting effect sizes, using parcellations, and conducting specification curve analyses.  ...  Regarding confirmatory research, we discuss problems with analytic flexibility, appropriately instantiating hypotheses, and controlling the error rate given how we threshold data and correct for multiple  ...  Portions of this manuscript were presented at the 2019 Flux conference in New York, NY, and the authors are grateful for the interest in and support of this topic expressed by conference attendees.  ... 
doi:10.1016/j.dcn.2020.100807 pmid:32759026 pmcid:PMC7403881 fatcat:ytbkd3czrfabnifv4a73iityvq

The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses

Lukas Snoek, Maite M. van der Miesen, Tinka Beemsterboer, Andries van der Leij, Annemarie Eigenhuis, H. Steven Scholte
2021 Scientific Data  
For each dataset and data modality, we provide the data in both raw and preprocessed form (both compliant with the Brain Imaging Data Structure), which were subjected to extensive (automated and manual  ...  BOLD MRI data, as well as detailed demographics and psychometric variables from a large set of healthy participants (N = 928, N = 226, and N = 216).  ...  statistics per brain region for four different anatomical parcellations/segmentations.  ... 
doi:10.1038/s41597-021-00870-6 pmid:33741990 fatcat:s667oto63vhuhnsyk4yk2qvr5y

A Cortical Surface-Based Meta-Analysis of Human Reasoning

Minho Shin, Hyeon-Ae Jeon
2021 Cerebral Cortex  
BMACS offers a fast, accurate, and accessible inference of the spatial patterns of cognitive processes from peak brain activations across studies by applying spatial point processes to the cortical surface  ...  Therefore, researchers have used meta-analyses for a better understanding of neural mechanisms of reasoning.  ...  S1 for unthresholded maps). Here, the abbreviations for the brain regions were borrowed from the multimodal parcellation of the Human Connectome Project (Glasser, Coalson, et al. 2016a) .  ... 
doi:10.1093/cercor/bhab174 pmid:34180523 pmcid:PMC8568011 fatcat:nlk5et5pzbgjbgc6azzmqe4d7i

Body mass variations relate to fractionated functional brain hierarchies [article]

Bo-yong Park, Hyunjin Park, Filip Morys, Mansu Kim, Kyoungseob Byeon, Hyebin Lee, Se-Hong Kim, Sofie Valk, Alain Dagher, Boris Bernhardt
2020 bioRxiv   pre-print
in the hierarchical integration of different brain system.  ...  These findings provide novel insights for functional connectome substrates of BMI variations in healthy young adults and point to potential molecular associations.  ...  NeuroVault.Org: A web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Front. .  ... 
doi:10.1101/2020.08.07.241794 fatcat:v4mwjf2usfbdjhudn67b6n456q

Opportunities for increased reproducibility and replicability of developmental neuroimaging

Eduard T. Klapwijk, Wouter van den Bos, Christian K. Tamnes, Nora M. Raschle, Kathryn L. Mills
2020 Developmental Cognitive Neuroscience  
Critical considerations relating to statistical power include challenges in recruitment and testing of young populations, how to increase the value of studies with small samples, and the opportunities  ...  In this review, we discuss the opportunities that these efforts offer for the field of developmental cognitive neuroscience, in particular developmental neuroimaging.  ...  KLM is funded by the National Institute of Mental HealthR25MH120869. The authors thank the Jacobs Foundation for funding a networking retreat for this collaboration.  ... 
doi:10.1016/j.dcn.2020.100902 pmid:33383554 pmcid:PMC7779745 fatcat:fyltogtr25gx7irpn7wm6kzkqa

Opportunities for increased reproducibility and replicability of developmental neuroimaging

Eduard T Klapwijk, Wouter Van Den Bos, Christian K Tamnes, Nora M Raschle, Kathryn L Mills
2021
Critical considerations relating to statistical power include challenges in recruitment and testing of young populations, how to increase the value of studies with small samples, and the opportunities  ...  In this review, we discuss the opportunities that these efforts offer for the field of developmental cognitive neuroscience, in particular developmental neuroimaging.  ...  KLM is funded by the National Institute of Mental HealthR25MH120869. The authors thank the Jacobs Foundation for funding a networking retreat for this collaboration.  ... 
doi:10.5167/uzh-208700 fatcat:hquxdzehebgcpa4lqejhph6clu