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CircMiMi: a stand-alone software for constructing circular RNA-microRNA-mRNA interactions across species

Tai-Wei Chiang, Te-Lun Mai, Trees-Juen Chuang
2022 BMC Bioinformatics  
Background Circular RNAs (circRNAs) are a class of non-coding RNAs formed by pre-mRNA back-splicing, which are widely expressed in animal/plant cells and often play an important role in regulating microRNA  ...  We further employ CircMiMi to identify circRNA-miRNA-mRNA interactions based on the circRNAs collected in NeuroCirc, a large-scale database of circRNAs in the human brain.  ...  Author contributions T-WC carried out the programming. T-LM contributed to data integration. T-JC conceived the study, analyzed the data, and wrote the article.  ... 
doi:10.1186/s12859-022-04692-0 pmid:35524165 pmcid:PMC9074202 fatcat:5i2fg5fxcnbp5iqyiej74fmmm4