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NeuroBlocks – Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects

Ali K. Ai-Awami, Johanna Beyer, Daniel Haehn, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
2016 IEEE Transactions on Visualization and Computer Graphics  
Visualizing large-scale segmentation projects in connectomics.  ...  To tackle the associated challenges, this paper presents NeuroBlocks, which is a novel visualization system for tracking the state, progress, and evolution of very large volumetric segmentation data in  ...  promising research direction is the integration of dynamic and evolving guidelines for different types of science projects that will allow students with little experience to follow common templates.  ... 
doi:10.1109/tvcg.2015.2467441 pmid:26529725 fatcat:d5qk6maqa5g3nfwlwaobslkgay

Scalable Interactive Visualization for Connectomics

Daniel Haehn, John Hoffer, Brian Matejek, Adi Suissa-Peleg, Ali Al-Awami, Lee Kamentsky, Felix Gonda, Eagon Meng, William Zhang, Richard Schalek, Alyssa Wilson, Toufiq Parag (+7 others)
2017 Informatics  
This data must be aligned, labeled, proofread, and formed into graphs, and each step of this process requires visualization for human verification.  ...  Finally, we share insights, experiences, and recommendations for creating an open source data management and interactive visualization platform for connectomics.  ...  More recently, Neuroblocks [13] proposed an online-system for tracking the progress and evolution of a large-scale segmentation project.  ... 
doi:10.3390/informatics4030029 fatcat:c3xrsvgbfjhefiqdicivejlt4i