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Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics

J. Martin, S. Abubucker, T. Wylie, Y. Yin, Z. Wang, M. Mitreva
2009 Nucleic Acids Research  
and Mitreva, Makedonka, ,"Nematode.net update 2008: Improvements enabling more efficient data mining and comparative nematode genomics. ABSTRACT Nematode  ...  Nematode.net was established to provide access to, and information-mining tools for, genomic-scale data from parasitic nematodes (5) .  ...  More static analyses will be recomputed on a quarterly basis as supporting resources themselves are updated.  ... 
doi:10.1093/nar/gkn744 pmid:18940860 pmcid:PMC2686480 fatcat:ljorexfsrjf7xlgijjkpyvvcha

Abstracts of Special Session Presentations at the 2000 APS Annual Meeting

2000 Phytopathology  
Nematode.net: Update on methods for data navigating and comparative genomics of nematodes. M. Mitreva, J. Martin, S. Abubucker, Y. Yin, T. Wylie, J. P. McCarter, and R. K. Wilson.  ...  The web-accessible resource Nematode.net (www.nematode.net) provides access to genome data specific to free-living and parasitic nematodes.  ... 
doi:10.1094/phyto.2000.90.6.s91 pmid:18944404 fatcat:tnypmhcptffodflusrtyekokge

Recent advances in candidate-gene and whole-genome approaches to the discovery of anthelmintic resistance markers and the description of drug/receptor interactions

Andrew C. Kotze, Peter W. Hunt, Philip Skuce, Georg von Samson-Himmelstjerna, Richard J. Martin, Heinz Sager, Jürgen Krücken, Jane Hodgkinson, Anne Lespine, Aaron R. Jex, John S. Gilleard, Robin N. Beech (+10 others)
2014 International Journal for Parasitology: Drugs and Drug Resistance  
We examine recent candidate-gene and whole-genome approaches to understanding anthelmintic resistance and identify markers.  ...  The Consortium for Anthelmintic Resistance and Susceptibility (CARS) provides a forum for scientists to meet and discuss the latest developments in the search for molecular markers of anthelmintic resistance  ...  Acknowledgements Funds to support the CARS2013 meeting were provided by Zoetis, and Virbac Animal Health. Alessandro Puoti is thanked for providing Figs. 4A and B.  ... 
doi:10.1016/j.ijpddr.2014.07.007 pmid:25516826 pmcid:PMC4266812 fatcat:cvonsuer5je4bc3dzzjq4gssye

Bioinformatics tools and analysis to identify candidate lethal genes in Root-knot nematode (RKN) and its comparison with soybean cyst nematode (SCN) infection in soybean

Ahmed I. Ismail
2013
To that end we compared RKN gene sequences to the well-characterized and fully sequenced genome of the free-living nematode C. elegans (Caenorhabditis elegans).  ...  We conducted a comparative genomics analysis, comparing RKN genes of six species: Meloidogyne arenaria, M. chitiwoodi, M. hapla, M. incognita, M. javanica, and M. paranaensis to C. elegans via WormBase  ...  We demonstrated how a database can be an active participant in data analysis and data mining.  ... 
doi:10.13016/m2w704 fatcat:vaewlbdmkzgdxbfiqhlbr4b53i

In silico identification of novel therapeutic targets from secretome analysis of parasites

Gagan Garg
2022
against parasitic infections using transcriptomic data.  ...  To achieve these goals, I have carried out an initial review of the different approaches for secretome analysis, compiling recent secretome data available for parasites and application of bioinformatic  ...  Steve Paterson for providing the Strongyloides ratti cDNA sequencing data. We are thankful to Prof.  ... 
doi:10.25949/19435268 fatcat:j5vjktgq65ffbfhpesj6e3emdy

Tools and Techniques for Genome Annotation and Analysis

Carson Hinton Holt
2014
Additionally, with improvements in genome assembly and the wide availability of next generation transcriptome data (mRNA-seq), researchers have the opportunity to re-annotate previously published genomes  ...  By using MAKER2 with these tools, research groups can quickly build genome annotations, perform analyses, and distribute their data to the wider scientific community.  ...  Martin J, Abubucker S, Wylie T, Yin Y, Wang Z, Mitreva M: Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics.  ... 
doi:10.26053/0h-xcfx-3vg0 fatcat:b7lchjg4sreb5gfbkfcyunuqeq