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Navigating the HapMap
2006
Briefings in Bioinformatics
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All of these properties make the HapMap no less an important resource than the human genome sequence itself and so this makes it essential viewing for all in the field of human biology. ...
HapMap is entirely complimentary to the human genome map and so it is particularly fitting that it should be viewed in a full genomic context. ...
The international HapMap project website The first stop for HapMap data should be the project website (www.hapmap.org) [35] . ...
doi:10.1093/bib/bbl021
pmid:16877472
fatcat:crobrdzxk5fkpelkhrgbbi7y4u
HAPMAP
2011
ACM SIGGRAPH 2011 Emerging Technologies on - SIGGRAPH '11
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In this sense, HAPMAP is able to present not only right and leftturn navigation cues, but also subtle navigation cues for navigating a winding road and/or path. ...
In future, HAPMAP will be able to use conjunction with the general route search system in the smartphone and GPS. ...
doi:10.1145/2048259.2048265
dblp:conf/siggraph/ImamuraAKMT11a
fatcat:ae4nyyh3f5gpnn7grwsrhlrbva
HAPMAP
2011
ACM SIGGRAPH 2011 Posters on - SIGGRAPH '11
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In this sense, HAPMAP is able to present not only right and leftturn navigation cues, but also subtle navigation cues for navigating a winding road and/or path. ...
In future, HAPMAP will be able to use conjunction with the general route search system in the smartphone and GPS. ...
doi:10.1145/2037715.2037766
dblp:conf/siggraph/ImamuraAKMT11
fatcat:clch4zsaurflbj2gqdb4es4rtq
seeQTL: a searchable database for human eQTLs
2011
Computer applications in the biosciences : CABIOS
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seeQTL is a comprehensive and versatile eQTL database, including various eQTL studies and a meta-analysis of HapMap eQTL information. ...
The database presents eQTL association results in a convenient browser, using both segmented local-association plots and genome-wide Manhattan plots. ...
ACKNOWLEDGEMENTS We thank Guanhua Chen for advice and help with the database development. Funding: Gillings Innovation Laboratory in Statistical Genomics (NIMH 5RC2MH089951 and R01MH090936). ...
doi:10.1093/bioinformatics/btr678
pmid:22171328
pmcid:PMC3268245
fatcat:cuqskeywqfhxjbm6dlv3ji3fqq
GWAS Integrator: a bioinformatics tool to explore human genetic associations reported in published genome-wide association studies
2011
European Journal of Human Genetics
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HapMap (http://hapmap.ncbi.nlm.nih.gov/), the Human Genome Epidemiology (HuGE) Navigator (http://www.hugenavigator.net/), SNP Annotation and Proxy Search (SNAP) (http://www.broadinstitute.org/mpg/snap ...
Users can define configuration parameters for proxy SNP retrieval, such as the HapMap release version, HapMap population, and r2 cutoff (Figure 1b) . Variant-4UCSC function. ...
CONFLICT OF INTEREST The authors declare no conflict of interest. ...
doi:10.1038/ejhg.2011.91
pmid:21610748
pmcid:PMC3190251
fatcat:mjasfelvunbt5pevzh3vvx7om4
Browsing HapMap Data Using the Genome Browser
2008
Cold Spring Harbor Protocols
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The genome browser at the HapMap website provides access to small-to medium-sized regions of the genome for this type of interactive exploration. ...
This basic protocol describes how to start using the genome browser. ...
This protocol provides details on how to use the genome browser to navigate to and explore HapMap data for a gene or region of interest. ...
doi:10.1101/pdb.prot5023
pmid:21356867
fatcat:w75573tvnjb5jevu5thsamp3cu
The International HapMap Project Web site
2005
Genome Research
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This work was supported by grants from The SNP Consortium and the Genome Institute of the National Institutes of Health. ...
Acknowledgments We thank the four anonymous reviewers for their constructive comments during the preparation of this work. ...
Links to the major subdivisions of the site are located in the banner at the top of the page as well as the navigation panel on the left border. ...
doi:10.1101/gr.4413105
pmid:16251469
pmcid:PMC1310647
fatcat:ifbmjsmq5jhdhlxatajautv7mq
KAREBrowser: SNP database of Korea Association REsource Project
2012
BMB Reports
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The International HapMap Project and the Human Genome Diversity Project (HGDP) provide plentiful resources on human genome information to the public. ...
KAREBrowser was based on the generic genome browser (GBrowse), a webbased application tool developed for users to navigate and visu alize the genomic features and annotations in an interactive manner. ...
-N73002-00), the Republic of Korea. ...
doi:10.5483/bmbrep.2012.45.1.47
pmid:22281013
fatcat:xjxawyvjh5ftrjq3xtgvrxtwka
KAREBrowser: SNP database of Korea Association REsource project
2010
2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)
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The International HapMap Project and the Human Genome Diversity Project (HGDP) provide plentiful resources on human genome information to the public. ...
KAREBrowser was based on the generic genome browser (GBrowse), a webbased application tool developed for users to navigate and visu alize the genomic features and annotations in an interactive manner. ...
-N73002-00), the Republic of Korea. ...
doi:10.1109/bibmw.2010.5703828
fatcat:5jycdg73ozbwfmf2yzbpn2udde
The Korean HapMap Project Website
2008
Genomics & Informatics
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The International HapMap Project, launched in October, 2002, motivated us to start the Korean HapMap Project in order to support Korean HapMap infrastructure development and to accelerate the finding of ...
Availability: The Korean HapMap Database is freely available at ...
(A) Links to the major menu of the site are located at the top of the page and the quick navigation panel on the left border. (B) Data search page is shown. ...
doi:10.5808/gi.2008.6.2.091
fatcat:noqbeavnlnf5td7qtgzgmyvdsu
AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context
2009
Computer applications in the biosciences : CABIOS
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Gene annotations can be retrieved from Ensembl, linkage disequilibrium data downloaded from HapMap and custom data imported in BED or WIG format. ...
AssociationViewer integrates functionalities that enable the aggregation or intersection of data tracks. ...
ACKNOWLEDGEMENTS We thank Nicolas Guex for helpful input on the features and usability of AssociationViewer, Sébastien Moretti and Laurent Falquet for testing the software and Victor Jongeneel for encouragement ...
doi:10.1093/bioinformatics/btp017
pmid:19168913
pmcid:PMC2647839
fatcat:uc5nwhkq25fkdfruk5oxtsbj7i
EvoSNP-DB: A database of genetic diversity in East Asian populations
2013
BMB Reports
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Non-redundant SNPs (1.6 million) were genotyped in 54 Korean trios (162 samples) and were compared with 4 million SNPs from HapMap phase II populations. ...
EvoSNP-DB is a web-based application that allows users to navigate and visualize measurements of population genetic differences in an interactive manner, and is available online at [http://biomi.cdc.go.kr ...
Acknowledgements This work was supported by a grant from the Korea Center for Disease Control and Prevention (4845-301, 4851-302, 4851-307) and intramural grant from the Korea National Institute of Health ...
doi:10.5483/bmbrep.2013.46.8.191
pmid:23977990
pmcid:PMC4133910
fatcat:uggyafi7jrdpxjco4jglahvj7q
Development of KHapmap Browser using DAS for Korean HapMap Research
2008
Genomics & Informatics
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The Korean HapMap Project has been carried out for the last 5 years since it started in June, 2003. ...
KHapmap Browser is expected to be an invaluable tool for the study of Korean and international Hapmap data. ...
The authors gratefully acknowledge the partial financial support of the Korean HapMap Project of the Ministry of Education, Science and Technology (MEST), and the Sasang Constitution SNP Database Project ...
doi:10.5808/gi.2008.6.2.057
fatcat:dtnezi6cfvfopiszorpftca6iu
Reviews of Science for Science Librarians: Genome-Wide Association Studies (GWAS)
2011
Science & technology libraries (New York, N.Y.)
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Since the completion of the Human Genome Project and the International HapMap Project, Genome-Wide Association Studies (GWAS) have been undertaken to uncover associations between genetic variants and human ...
GWAS research is a step forward in biomedical research, and this article provides an overview of the history, study design and significant achievements in this field. ...
HuGE Navigator: http://hugenavigator.net HuGE Navigator is a publicly accessible portal that links to information on human genomics and genetic epidemiology. ...
doi:10.1080/0194262x.2011.595315
fatcat:b6j462h7gbdjjheftl76xdnokq
Haploview: analysis and visualization of LD and haplotype maps
2004
Bioinformatics
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Research over the last few years has revealed significant haplotype structure in the human genome. ...
The characterization of these patterns, particularly in the context of medical genetic association studies, is becoming a routine research activity. ...
A graphical genome browser maintained at that site allows researchers to navigate to a particular region of the genome and dump HapMap genotype data for all genotyped markers in the selected region in ...
doi:10.1093/bioinformatics/bth457
pmid:15297300
fatcat:xa3wpzzwazf6xl6gt5aw2ck4ny
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