Filters








610 Hits in 1.6 sec

Navigating the HapMap

M. R. Barnes
2006 Briefings in Bioinformatics  
All of these properties make the HapMap no less an important resource than the human genome sequence itself and so this makes it essential viewing for all in the field of human biology.  ...  HapMap is entirely complimentary to the human genome map and so it is particularly fitting that it should be viewed in a full genomic context.  ...  The international HapMap project website The first stop for HapMap data should be the project website (www.hapmap.org) [35] .  ... 
doi:10.1093/bib/bbl021 pmid:16877472 fatcat:crobrdzxk5fkpelkhrgbbi7y4u

HAPMAP

Yuki Imamura, Hironori Arakawa, Sho Kamuro, Kouta Minamizawa, Susumu Tachi
2011 ACM SIGGRAPH 2011 Emerging Technologies on - SIGGRAPH '11  
In this sense, HAPMAP is able to present not only right and leftturn navigation cues, but also subtle navigation cues for navigating a winding road and/or path.  ...  In future, HAPMAP will be able to use conjunction with the general route search system in the smartphone and GPS.  ... 
doi:10.1145/2048259.2048265 dblp:conf/siggraph/ImamuraAKMT11a fatcat:ae4nyyh3f5gpnn7grwsrhlrbva

HAPMAP

Yuki Imamura, Hironori Arakawa, Sho Kamuro, Kouta Minamizawa, Susumu Tachi
2011 ACM SIGGRAPH 2011 Posters on - SIGGRAPH '11  
In this sense, HAPMAP is able to present not only right and leftturn navigation cues, but also subtle navigation cues for navigating a winding road and/or path.  ...  In future, HAPMAP will be able to use conjunction with the general route search system in the smartphone and GPS.  ... 
doi:10.1145/2037715.2037766 dblp:conf/siggraph/ImamuraAKMT11 fatcat:clch4zsaurflbj2gqdb4es4rtq

seeQTL: a searchable database for human eQTLs

Kai Xia, Andrey A. Shabalin, Shunping Huang, Vered Madar, Yi-Hui Zhou, Wei Wang, Fei Zou, Wei Sun, Patrick F. Sullivan, Fred A. Wright
2011 Computer applications in the biosciences : CABIOS  
seeQTL is a comprehensive and versatile eQTL database, including various eQTL studies and a meta-analysis of HapMap eQTL information.  ...  The database presents eQTL association results in a convenient browser, using both segmented local-association plots and genome-wide Manhattan plots.  ...  ACKNOWLEDGEMENTS We thank Guanhua Chen for advice and help with the database development. Funding: Gillings Innovation Laboratory in Statistical Genomics (NIMH 5RC2MH089951 and R01MH090936).  ... 
doi:10.1093/bioinformatics/btr678 pmid:22171328 pmcid:PMC3268245 fatcat:cuqskeywqfhxjbm6dlv3ji3fqq

GWAS Integrator: a bioinformatics tool to explore human genetic associations reported in published genome-wide association studies

Wei Yu, Ajay Yesupriya, Anja Wulf, Lucia A Hindorff, Nicole Dowling, Muin J Khoury, Marta Gwinn
2011 European Journal of Human Genetics  
HapMap (http://hapmap.ncbi.nlm.nih.gov/), the Human Genome Epidemiology (HuGE) Navigator (http://www.hugenavigator.net/), SNP Annotation and Proxy Search (SNAP) (http://www.broadinstitute.org/mpg/snap  ...  Users can define configuration parameters for proxy SNP retrieval, such as the HapMap release version, HapMap population, and r2 cutoff (Figure 1b) . Variant-4UCSC function.  ...  CONFLICT OF INTEREST The authors declare no conflict of interest.  ... 
doi:10.1038/ejhg.2011.91 pmid:21610748 pmcid:PMC3190251 fatcat:mjasfelvunbt5pevzh3vvx7om4

Browsing HapMap Data Using the Genome Browser

A. V. Smith
2008 Cold Spring Harbor Protocols  
The genome browser at the HapMap website provides access to small-to medium-sized regions of the genome for this type of interactive exploration.  ...  This basic protocol describes how to start using the genome browser.  ...  This protocol provides details on how to use the genome browser to navigate to and explore HapMap data for a gene or region of interest.  ... 
doi:10.1101/pdb.prot5023 pmid:21356867 fatcat:w75573tvnjb5jevu5thsamp3cu

The International HapMap Project Web site

G. A. Thorisson
2005 Genome Research  
This work was supported by grants from The SNP Consortium and the Genome Institute of the National Institutes of Health.  ...  Acknowledgments We thank the four anonymous reviewers for their constructive comments during the preparation of this work.  ...  Links to the major subdivisions of the site are located in the banner at the top of the page as well as the navigation panel on the left border.  ... 
doi:10.1101/gr.4413105 pmid:16251469 pmcid:PMC1310647 fatcat:ifbmjsmq5jhdhlxatajautv7mq

KAREBrowser: SNP database of Korea Association REsource Project

Chang-Bum Hong, Young-Jin Kim, Sang-Hoon Moon, Young-Ah Shin, Yoon-Shin Cho, Jong-Young Lee
2012 BMB Reports  
The International HapMap Project and the Human Genome Diversity Project (HGDP) provide plentiful resources on human genome information to the public.  ...  KAREBrowser was based on the generic genome browser (GBrowse), a webbased application tool developed for users to navigate and visu alize the genomic features and annotations in an interactive manner.  ...  -N73002-00), the Republic of Korea.  ... 
doi:10.5483/bmbrep.2012.45.1.47 pmid:22281013 fatcat:xjxawyvjh5ftrjq3xtgvrxtwka

KAREBrowser: SNP database of Korea Association REsource project

Chang Bum Hong, Young Jin Kim, Sanghoon Moon, Young-Ah Shin, Yoon Shin Cho, Jong-Young Lee
2010 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)  
The International HapMap Project and the Human Genome Diversity Project (HGDP) provide plentiful resources on human genome information to the public.  ...  KAREBrowser was based on the generic genome browser (GBrowse), a webbased application tool developed for users to navigate and visu alize the genomic features and annotations in an interactive manner.  ...  -N73002-00), the Republic of Korea.  ... 
doi:10.1109/bibmw.2010.5703828 fatcat:5jycdg73ozbwfmf2yzbpn2udde

The Korean HapMap Project Website

Young-Uk Kim, Seung-Ho Kim, Hoon Jin, Young-Kyu Park, Mi-Hyun Ji, Young-Joo Kim
2008 Genomics & Informatics  
The International HapMap Project, launched in October, 2002, motivated us to start the Korean HapMap Project in order to support Korean HapMap infrastructure development and to accelerate the finding of  ...  Availability: The Korean HapMap Database is freely available at  ...  (A) Links to the major menu of the site are located at the top of the page and the quick navigation panel on the left border. (B) Data search page is shown.  ... 
doi:10.5808/gi.2008.6.2.091 fatcat:noqbeavnlnf5td7qtgzgmyvdsu

AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context

Olivier Martin, Armand Valsesia, Amalio Telenti, Ioannis Xenarios, Brian J. Stevenson
2009 Computer applications in the biosciences : CABIOS  
Gene annotations can be retrieved from Ensembl, linkage disequilibrium data downloaded from HapMap and custom data imported in BED or WIG format.  ...  AssociationViewer integrates functionalities that enable the aggregation or intersection of data tracks.  ...  ACKNOWLEDGEMENTS We thank Nicolas Guex for helpful input on the features and usability of AssociationViewer, Sébastien Moretti and Laurent Falquet for testing the software and Victor Jongeneel for encouragement  ... 
doi:10.1093/bioinformatics/btp017 pmid:19168913 pmcid:PMC2647839 fatcat:uc5nwhkq25fkdfruk5oxtsbj7i

EvoSNP-DB: A database of genetic diversity in East Asian populations

Young Uk Kim, Young Jin Kim, Jong-Young Lee, Kiejung Park
2013 BMB Reports  
Non-redundant SNPs (1.6 million) were genotyped in 54 Korean trios (162 samples) and were compared with 4 million SNPs from HapMap phase II populations.  ...  EvoSNP-DB is a web-based application that allows users to navigate and visualize measurements of population genetic differences in an interactive manner, and is available online at [http://biomi.cdc.go.kr  ...  Acknowledgements This work was supported by a grant from the Korea Center for Disease Control and Prevention (4845-301, 4851-302, 4851-307) and intramural grant from the Korea National Institute of Health  ... 
doi:10.5483/bmbrep.2013.46.8.191 pmid:23977990 pmcid:PMC4133910 fatcat:uggyafi7jrdpxjco4jglahvj7q

Development of KHapmap Browser using DAS for Korean HapMap Research

Hoon Jin, Seung-Ho Kim, Young-Uk Kim, Young-Kyu Park, Mi-Hyun Ji, Young-Joo Kim
2008 Genomics & Informatics  
The Korean HapMap Project has been carried out for the last 5 years since it started in June, 2003.  ...  KHapmap Browser is expected to be an invaluable tool for the study of Korean and international Hapmap data.  ...  The authors gratefully acknowledge the partial financial support of the Korean HapMap Project of the Ministry of Education, Science and Technology (MEST), and the Sasang Constitution SNP Database Project  ... 
doi:10.5808/gi.2008.6.2.057 fatcat:dtnezi6cfvfopiszorpftca6iu

Reviews of Science for Science Librarians: Genome-Wide Association Studies (GWAS)

Sarah H. Jeong, Seong-Tae Kim
2011 Science & technology libraries (New York, N.Y.)  
Since the completion of the Human Genome Project and the International HapMap Project, Genome-Wide Association Studies (GWAS) have been undertaken to uncover associations between genetic variants and human  ...  GWAS research is a step forward in biomedical research, and this article provides an overview of the history, study design and significant achievements in this field.  ...  HuGE Navigator: http://hugenavigator.net HuGE Navigator is a publicly accessible portal that links to information on human genomics and genetic epidemiology.  ... 
doi:10.1080/0194262x.2011.595315 fatcat:b6j462h7gbdjjheftl76xdnokq

Haploview: analysis and visualization of LD and haplotype maps

J. C. Barrett, B. Fry, J. Maller, M. J. Daly
2004 Bioinformatics  
Research over the last few years has revealed significant haplotype structure in the human genome.  ...  The characterization of these patterns, particularly in the context of medical genetic association studies, is becoming a routine research activity.  ...  A graphical genome browser maintained at that site allows researchers to navigate to a particular region of the genome and dump HapMap genotype data for all genotyped markers in the selected region in  ... 
doi:10.1093/bioinformatics/bth457 pmid:15297300 fatcat:xa3wpzzwazf6xl6gt5aw2ck4ny
« Previous Showing results 1 — 15 out of 610 results