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Navigating information spaces: A case study of related article search in PubMed
2008
Information Processing & Management
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We present a case study of related article search, a browsing tool designed to help users navigate the information space defined by results of the PubMed Ò search engine. ...
We examine the effectiveness of related article search from two perspectives: a topological analysis of networks generated from information needs represented in the TREC 2005 genomics track and a query ...
This work is supported by the Intramural Research Program of the NIH, National Library of Medicine. The first author would like to thank Esther and Kiri for their kind support. ...
doi:10.1016/j.ipm.2008.04.002
fatcat:53x3fisvgrepnfmoyullm5bsnm
Supporting effective health and biomedical information retrieval and navigation: A novel facet view interface evaluation
2011
Journal of Biomedical Informatics
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We developed a new topic cluster based information navigation system called SimMed. Instead of offering a list of documents, SimMed presents users with a list of ranked clusters. ...
A total of 42 study participants were recruited to use both interfaces for health information exploration search tasks. ...
We also thank Natalie Hazen Burclaff for her many valuable suggestions and help in proofreading the paper. ...
doi:10.1016/j.jbi.2011.01.008
pmid:21277997
fatcat:jfcebx5vrzczdis2ijfihqgnlq
Ranking target objects of navigational queries
2006
Proceedings of the eighth ACM international workshop on Web information and data management - WIDM '06
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In order to understand the characteristics of lgPR, an expert compared the Top K target objects (publications in the PubMed source) produced by lgPR and a word-based ranking method that uses text features ...
A navigational query in the life science graph produces a result graph which is a layered directed acyclic graph (DAG). Traversing the result paths in this graph reaches a target object set (TOS). ...
User Evaluation In our user evaluation of lgPR, we consider a set of complex queries typical of a scientist searching for gene related PubMed publications, and the Top K results of a word based ranking ...
doi:10.1145/1183550.1183558
dblp:conf/widm/RaschidWLVTSS06
fatcat:hvtilvaskbgm7p63eouijywh6m
Crisis of Erasure
2021
˜The œInternational journal of information, diversity, & inclusion
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In this paper, we use the topic of breast cancer as an example of health crisis erasure in both informational and institutional contexts, particularly within the transgender and gender-nonconforming population ...
risk of discrimination in healthcare settings (Casey et al., 2019). ...
The International Journal of Information, Diversity, & Inclusion, 5(4) ...
doi:10.33137/ijidi.v5i4.37406
fatcat:qou2pkvvcnbwrjwmhop6qkftfe
Utilizing Blue Ocean Strategies for Electronic Health Care Documentation to Navigate the Red Ocean Waters of Health Care Reform
2015
Americas Conference on Information Systems
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Health care is adrift in a sea of change. In order to navigate challenges, such as health care reform and meaningful use, new strategies are needed. ...
Preliminary results are promising with a reduction in documentation errors and a process redesign that includes data collection of error types for reeducation and engagement of the end-user of the EHR, ...
A search was conducted using the Cumulative Index to Nursing and Allied Health (CINHAL), PubMed, and Cochrane databases using the key words documentation, electronic health record, and quality outcomes ...
dblp:conf/amcis/DosterR15
fatcat:mvooawxnn5dqvhgbwibzig74xa
Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem
2015
Information Sciences
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Specifically, we started in the domain of genetic algorithms (GA) and selected the Artificial Ant Problem as a test case. ...
This navigation problem is widely known as a classical benchmark test and possesses a large body of literature. ...
AVS and DMH have been supported in part by Joint NSF/NIGMS BioMath Program, 1-R01-GM072022, the National Institutes of Health, 2R56GM072022. ...
doi:10.1016/j.ins.2015.02.012
pmid:25767296
pmcid:PMC4353400
fatcat:kr6dzr6gdrbczizdrolpywegdq
Trial2rev: Combining machine learning and crowd-sourcing to create a shared space for updating systematic reviews
2019
JAMIA Open
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Users interact with the system by browsing, searching, or adding systematic reviews, verifying links to trials included in the review, and adding or voting on trials that they would expect to include in ...
The trial2rev system is a web-based interface to a database that collates and augments information from multiple sources including bibliographic databases, the ClinicalTrials.gov registry, and the actions ...
manual search for new relevant studies and a re-evaluation of the results. ...
doi:10.1093/jamiaopen/ooy062
pmid:31984340
pmcid:PMC6951914
fatcat:35snrkjivjbwjasgyj7osqgiuq
Memory integration constructs maps of space, time, and concepts
2017
Current Opinion in Behavioral Sciences
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Integration is observed over a wide range of scales, suggesting that memories contain information about both broad and fine-grained contexts. ...
Recent evidence demonstrates that new events are learned in the context of their relationships to existing memories. ...
National Institute of Neurological Disorders and Stroke (F32 NS098808 to K.R.S.) of the National Institutes of Health. ...
doi:10.1016/j.cobeha.2017.08.007
pmid:28924579
pmcid:PMC5600494
fatcat:2i37iupma5bttbqn3jc2zznlre
Dimensions and elements of people's mental models of an information-rich Web space
2010
Journal of the American Society for Information Science and Technology
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This study employed a new method, concept listing, to elicit people's mental models of an information-rich space, MedlinePlus, after they interacted with the system for 5 minutes. ...
The composition of participants' mental models of MedlinePlus was consistent with that of their models of information-rich Web spaces in general. ...
I would also like to thank Andrew Dillon and anonymous reviewers for their insightful comments on earlier drafts of this article. ...
doi:10.1002/asi.21406
fatcat:3a4wkwxvl5funmspub5sgxt4z4
The construction of mental models of information-rich web spaces
2010
SIGIR Forum
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In their initial model (T0), subjects evaluated the interface of information-rich web spaces in relation to two aspects: look and feel and navigation. ...
ability navigate more easily in a particular information space than people with low spatial ability. ...
Write down each of the steps that you would follow as if you were actually using the system to find related information. Please describe/explain the drawing. ...
doi:10.1145/1842890.1842907
fatcat:uwo3cfwykrecrkikdjpplzovhy
Scientific competency questions as the basis for semantically enriched open pharmacological space development
2013
Drug Discovery Today
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In this review, we outline the scientific requirements identified by the Innovative Medicines Initiative (IMI) Open PHACTS consortium for the design of an open pharmacological space (OPS) information system ...
Molecular information systems play an important part in modern data-driven drug discovery. They do not only support decision making but also enable new discoveries via association and inference. ...
Acknowledgements The authors should like to thank all colleagues participating in the Open PHACTS consortium for discussions and insights leading to this consolidated view. ...
doi:10.1016/j.drudis.2013.05.008
pmid:23702085
fatcat:cdg6j3hxhrce5jwruwtgvigcky
Clustering the annotation space of proteins
2005
BMC Bioinformatics
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We demonstrate examples for each of these cases, and thoroughly discuss an example of a propagated error in SwissProt: a vacuolar ATPase subunit M9.2 erroneously annotated as vacuolar ATP synthase subunit ...
It is also accurate, recovering consistent protein families agreeing on average in more than 97% with sequence-based protein families from Pfam. ...
Acknowledgements The authors thank Michael Lappe, Carolin Cosiol and members of the CGG group for the helpful discussions. ...
doi:10.1186/1471-2105-6-24
pmid:15703069
pmcid:PMC552314
fatcat:ckrnjbxnencuzajnw733ihfgdm
A tool for exploring space-time patterns: an animation user research
2006
International Journal of Health Geographics
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John Snow (1813-1854) used a case map to identify water well as the source of a cholera outbreak in London in the 1800s, the use of spatio-temporal maps have become vital tools in a wide range of disease ...
The test focussed on the role of animation passive and interactive capabilities in exploring space-time patterns by engaging test-subjects in thinking aloud evaluation protocol. ...
Menno-Jan Kraak, of the International Institute of Geoinformation Science and Earth Observation and Prof. Dr. Ferjan Ormeling, of Cartography Department of Utrecht University. ...
doi:10.1186/1476-072x-5-35
pmid:16938138
pmcid:PMC1570344
fatcat:m4k7ra2ljzai5ngl4qqn4eifta
Exploring G Protein-Coupled Receptors (GPCRs) Ligand Space via Cheminformatics Approaches: Impact on Rational Drug Design
2018
Frontiers in Pharmacology
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In search of novel ligands using a structure-based approach: a case study on the adenosine A2A receptor. J. Comput. Aided Mol. ...
Chemography: the art of navigating in chemical space. J. Comb. ...
doi:10.3389/fphar.2018.00128
pmid:29593527
pmcid:PMC5854945
fatcat:drx2x7lo7jcehcto2ntknqsawe
Unobtrusive Health Monitoring in Private Spaces: The Smart Vehicle
2020
Sensors
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PubMed, IEEE Xplore, and Scopus delivered 959 articles. We firstly screened titles and abstracts for relevance. Thereafter, we assessed the entire articles. ...
A guide is provided to the currently proposed sensor systems. Through this guide, potential sensor information can be derived from the biomedical data needed for respective purposes. ...
Afterward, we studied the full papers and excluded work that was published already in included articles (in such cases, we found a large overlap in the content of papers of the same authors). ...
doi:10.3390/s20092442
pmid:32344815
fatcat:42ngszyebzfjfdblntaqdiw3be
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