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NONCODEv4: exploring the world of long non-coding RNA genes
2013
Nucleic Acids Research
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Particularly, the number of long non-coding RNA (lncRNA) has increased sharply from 73 327 to 210 831. ...
Additionally, we present expression profile of lncRNA genes by graphs based on public RNA-seq data for human and mouse, as well as predict functions of these lncRNA genes. ...
Xiaohua Shen of Tsinghua University for help during the course of this work. Conflict of interest statement. None declared. ...
doi:10.1093/nar/gkt1222
pmid:24285305
pmcid:PMC3965073
fatcat:hh44zvq4urefxi43d7xa7c3pv4
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish
2018
BMC Genomics
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
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Recent studies of deep sequencing had discovered a large number of long non-coding RNAs (lncRNAs) in zebrafish. However, only few of them had been functionally characterized. ...
Based on that, a co-expression network upon zebrafish coding and lncRNA genes was constructed and analyzed, and used to predict the Gene Ontology (GO) and the KEGG annotation of lncRNA. ...
Competing interests The authors declare that they have no competing interests. ...
doi:10.1186/s12864-018-4458-7
pmid:29764394
pmcid:PMC5954278
fatcat:j5adl6a35jh6zjqho72ggfj42a
YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut
2015
F1000Research
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Xie C, Yuan J, Li H, et al.: NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res. 2014; 42(Database issue): D98-D103. ...
Arrial RT, Togawa RC, Brigido Mde M: Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus paracoccidioides brasiliensis. ...
Acknowledgements We are grateful to Mary Lou Mendum for her inputs in preparing the manuscript. ...
doi:10.12688/f1000research.6617.1
pmid:26870317
pmcid:PMC4732554
fatcat:qbh5yu5edjeo3fhbq55rsxqixe
Altered Expression of Long Noncoding RNAs in Blood After Ischemic Stroke and Proximity to Putative Stroke Risk Loci
2016
Stroke
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Long noncoding RNAs: functional surprises from the RNA world. Genes Dev. 2009;23:1494-1504. doi: 10.1101/gad.1800909. 21. Pink RC, Carter DR. Pseudogenes as regulators of biological function. ...
Non-coding RNAs in human disease. Nat Rev Genet.2011;12:861-874. doi: 10.1038/nrg3074. 17. Taft RJ, Pang KC, Mercer TR, Dinger M, Mattick JS. Non-coding RNAs: regulators of disease. ...
doi:10.1161/strokeaha.116.013869
pmid:27834745
pmcid:PMC5127755
fatcat:iesjamwmvnflldgzyqrya6p6qu