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NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes
2013
Nucleic Acids Research
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The updated release of 'NGSmethDB' (http:// bioinfo2.ugr.es/NGSmethDB) is a repository for single-base whole-genome methylome maps for the best-assembled eukaryotic genomes. ...
We implemented stringent quality controls to minimize important error sources, such as sequencing errors, bisulfite failures, clonal reads or single nucleotide variants (SNVs). ...
CONCLUSIONS NGSmethDB provides high-resolution epigenome-wide methylome maps for a collection of the best-assembled eukaryotic genomes. ...
doi:10.1093/nar/gkt1202
pmid:24271385
pmcid:PMC3964946
fatcat:6amwg23cfvechfgkjumjx4wujy
HPVbase – a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas
2015
Scientific Reports
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NGSmethDB:
an updated genome resource for high quality, single-cytosine resolution methylomes.
Nucleic Acids Res42, D53-59; DOI:10.1093/nar/gkt1202 (2014).
8
microRNAs
targets
on
viruses. ...
D. et al. miRTarBase update 2014: an information resource for
experimentally validated miRNA-target interactions. Nucleic Acids Res42, D78-85;
DOI:10.1093/nar/gkt1266 (2014).
26
Szczesniak, M. ...
doi:10.1038/srep12522
pmid:26205472
pmcid:PMC4513345
fatcat:7nitzq6ryvgwhjrcutyhknvg3y
Bioinformatics Tools and Genomic Resources Available in Understanding the Structure and Function of Gossypium
[chapter]
2016
Bioinformatics - Updated Features and Applications
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This discourse begins with a description of concurrent advances in high-throughput genome sequencing and bioinformatics analyses and focuses on four major sections covering bioinformatics tools and resources ...
The primary goal of this chapter is to provide a review of such tools and resources for analyzing the structure and function of the cotton genome with preferential emphasis on this complex and economically ...
Ivona Lovric for their valuable suggestions and comments in improving this book chapter. ...
doi:10.5772/64325
fatcat:y4svepemajghfddagn535mvpqy
Next-Generation Sequencing: From Understanding Biology to Personalized Medicine
2013
Biology
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Within just a few years, the new methods for high-throughput next-generation sequencing have generated completely novel insights into the heritability and pathophysiology of human disease. ...
In this review, we wish to highlight the benefits of the current state-of-the-art sequencing technologies for genetic and epigenetic research. ...
Acknowledgements Our research is supported by grants from the German Ministry of Education and Research (BMBF): NGFN-plus 01GS0836, NGFN-Herz-Kreislauf-German Centre for Cardiovascular Research); the University ...
doi:10.3390/biology2010378
pmid:24832667
pmcid:PMC4009863
fatcat:zkakkzgc25benbu2zzenhvbjvm
Sequencing technologies and genome sequencing
2011
Journal of Applied Genetics
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The high-throughput -next generation sequencing (HT-NGS) technologies are currently the hottest topic in the field of human and animals genomics researches, which can produce over 100 times more data compared ...
With the ongoing developments of high throughput sequencing machines and advancement of modern bioinformatics tools at unprecedented pace, the target goal of sequencing individual genomes of living organism ...
Bhaijee et al. 2011 Database for whole genome methylation maps at single-cytosine resolution: NGS methylation database (NGSmethDB: http://bioinfo2.ugr.es/ NGSmethDB/gbrowse/) for human, mouse and Arabidopsis ...
doi:10.1007/s13353-011-0057-x
pmid:21698376
pmcid:PMC3189340
fatcat:ocf66v7fv5gdtmir5h35gochaq