Filters








4 Hits in 4.0 sec

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis

Jochen Singer, Hans-Joachim Ruscheweyh, Ariane L Hofmann, Thomas Thurnherr, Franziska Singer, Nora C Toussaint, Charlotte K Y Ng, Salvatore Piscuoglio, Christian Beisel, Gerhard Christofori, Reinhard Dummer, Michael N Hall (+11 others)
2017 Bioinformatics  
Results: We developed NGS-pipe, a flexible, transparent and easy-to-use framework for the design of pipelines to analyze whole-exome, whole-genome and transcriptome sequencing data.  ...  Availability and implementation: https://github.com/cbg-ethz/NGS-pipe  ...  In combination with a modular backbone, where the execution of each analysis step is controlled by a rule, NGS-pipe is a flexible, easily extendable and highly configurable framework for NGS analysis.  ... 
doi:10.1093/bioinformatics/btx540 pmid:28968639 pmcid:PMC5870795 fatcat:7dl7yic6xvddrlovc4txvl436q

NGS-pipe: a flexible, easily extendable, and highly configurable framework for NGS analysis

Jochen Singer, Hans-Joachim Ruscheweyh, Ariane L. Hofmann, Thomas Thurnherr, Franziska Singer, Nora C. Toussaint, Charlotte K. Y. Ng, Salvatore Piscuoglio, Christian Beisel, Gerhard Christofori, Reinhard Dummer, Michael N. Hall (+10 others)
2018
Results: We developed NGS-pipe, a flexible, transparent and easy-to-use framework for the design of pipelines to analyze whole-exome, whole-genome and transcriptome sequencing data.  ...  Availability and implementation: https://github.com/cbg-ethz/NGS-pipe  ...  In combination with a modular backbone, where the execution of each analysis step is controlled by a rule, NGS-pipe is a flexible, easily extendable and highly configurable framework for NGS analysis.  ... 
doi:10.5451/unibas-ep56308 fatcat:3dclwlwduzhojc2eamakwoxfim

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package

Taewoon Joo, Ji-Hye Choi, Ji-Hye Lee, So Eun Park, Youngsic Jeon, Sae Hoon Jung, Hyun Goo Woo
2019 BMC Bioinformatics  
Conclusion: SEQprocess provides a highly extendable and R compatible framework that can manage customized and reproducible pipelines for handling multiple legacy NGS processing tools.  ...  Here, we developed SEQprocess, a highly extendable framework that can provide standard as well as customized pipelines for NGS data processing.  ...  Funding institutes did not play any roles in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.  ... 
doi:10.1186/s12859-019-2676-x fatcat:ce42qsuv55g5zavbhkto47spk4

A life cycle thinking-based energy retrofits planning approach for existing residential buildings

Tharindu Prabatha Hewa Godella Waththage
2022
Buildings account for 32-40% of the global energy use and thereby are responsible for a significant portion of GHG emissions.  ...  A fuzzy-based performance prediction and retrofit selection approach was used to identify the best retrofit strategies for a given building while accounting for the performance uncertainties.  ...  All the provinces discussed above are equipped with NG pipe networks except NL.  ... 
doi:10.14288/1.0406300 fatcat:ado67kcsvvcnro6mh2v6sigtaq