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MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria

Sarita Ranjan, Ranjit Gundu, Akash Ranjan
2006 BMC Bioinformatics  
Here we implement and report a strategy to computationally identify transcriptional units and operons of mycobacteria and construct a database-MycoperonDB.  ...  Description: We have predicted transcriptional units and operons in mycobacteria and organized these predictions in the form of relational database called MycoperonDB.  ...  Conclusion We have predicted transcriptional units and operons in mycobacteria and organized these predictions in the form of a relational database called MycoperonDB.  ... 
doi:10.1186/1471-2105-7-s5-s9 pmid:17254314 pmcid:PMC1764487 fatcat:626nih5kjfhstcjxdc4xpuf3um

Web Resources on TB: Information, Research, and Data Analysis [chapter]

Marcos Catanho, Antonio Basilio de Mir
2013 Tuberculosis - Current Issues in Diagnosis and Management  
May , , -. [ ] Ranjan, S, Gundu, RK, Ranjan, ", & Mycoperon, . a database of computationally identified operons and transcriptional units in Mycobacteria.  ...  The MycoperonD" [ ] is a repository of known and computationally predicted operons and transcriptional units of currently five different mycobacteria -M. tuberculosis strains H Rv and CDC , M. bovis "F  ... 
doi:10.5772/53949 fatcat:ktngbaquvvc5np23c7aydabf4u

REMap: Operon map of M. tuberculosis based on RNA sequence data

Shaaretha Pelly, Kathryn Winglee, Fangfang Xia, Rick L. Stevens, William R. Bishai, Gyanu Lamichhane
2016 Tuberculosis  
A map of the transcriptional organization of genes of an organism is a basic tool that is necessary to understand and facilitate a more accurate genetic manipulation of the organism.  ...  Our prediction algorithm, REMap (RNA Expression Mapping of operons), considers the many cases of transcription coverage of intergenic regions, and avoids dependencies on functional annotation and arbitrary  ...  Acknowledgments Funding This work was supported by the National Institutes of Health award DP2OD008459 to GL. Abbreviations REMap RNA Expression Mapping of operons  ... 
doi:10.1016/j.tube.2016.04.010 pmid:27450008 pmcid:PMC4967370 fatcat:divdoryikjhl7bhuzzkiefmwvm