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Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI

Tristan Glatard, Adrien Marion, Hugues Benoit-Cattin, Sorina Camarasu-Pop, Patrick Clarysse, Rafael Ferreira da Silva, Germain Forestier, Bernard Gibaud, Carole Lartizien, Herve Liebgott, Kevin Moulin, Denis Friboulet
2012 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)  
This paper presents the Virtual Imaging Platform, an openly-accessible web platform for multi-modality image simulation.  ...  Medical image simulation is useful for biological modeling, image analysis, and designing new imaging devices but it is not widely available due to the complexity of simulators, the scarcity of object  ...  In this paper, we describe VIP features and show how it is used to simulate multi-modality medical images from generic models.  ... 
doi:10.1109/isbi.2012.6235493 dblp:conf/isbi/GlatardMBCCSFGLLMF12 fatcat:htj7rspmlndjpkzy7pgjxjy3nm

A Virtual Imaging Platform for Multi-Modality Medical Image Simulation

T. Glatard, C. Lartizien, B. Gibaud, Rafael Ferreira da Silva, G. Forestier, F. Cervenansky, M. Alessandrini, H. Benoit-Cattin, O. Bernard, S. Camarasu-Pop, N. Cerezo, P. Clarysse (+8 others)
2013 IEEE Transactions on Medical Imaging  
This paper presents the Virtual Imaging Platform (VIP), a platform accessible at http://vip.creatis.insa-lyon.fr to facilitate the sharing of object models and medical image simulators, and to provide  ...  Simulation results obtained in 4 image modalities and with different models show that VIP is versatile and robust enough to support large simulations.  ...  ACKNOWLEDGMENT This work is funded by the French National Research Agency (ANR) under grant ANR-09-COSI-03. We thank the European Grid Initiative and "France-Grilles".  ... 
doi:10.1109/tmi.2012.2220154 pmid:23014715 fatcat:rrlkowdhxvcyzhol6mlmpz6x2i

Sharing object models for multi-modality medical image simulation: A semantic approach

Germain Forestier, Adrien Marion, Hugues Benoit-Cattin, Patrick Clarysse, Denis Friboulet, Tristan Glatard, Patrick Hugonnard, Carole Lartizien, Herve Liebgott, Joachim Tabary, Bernard Gibaud
2011 2011 24th International Symposium on Computer-Based Medical Systems (CBMS)  
Medical image simulation produces virtual images from software representations of imaging devices and virtual object models representing the human body.  ...  In particular, we developed an ontology that contains the relevant concepts and relations of the domain of object models for image simulation.  ...  We gratefully thank all the participants of the "GDR STIC Santé" January 2011 workshop for their useful input and feedback on this topic.  ... 
doi:10.1109/cbms.2011.5999167 dblp:conf/cbms/ForestierMBCFGHLLTG11 fatcat:gdpcnfg3djbfzfasbqsw3ywf64

VIP-MAN: AN IMAGE-BASED WHOLE-BODY ADULT MALE MODEL CONSTRUCTED FROM COLOR PHOTOGRAPHS OF THE VISIBLE HUMAN PROJECT FOR MULTI-PARTICLE MONTE CARLO CALCULATIONS

X. G. Xu, T. C. Chao, A. Bozkurt
2000 Health Physics  
This article describes the development of an image-based whole-body model, called VIP-Man, using transversal color photographic images obtained from the National Library of Medicine's Visible Human Project  ...  As the first of a series of papers on dose calculations based on VIP-Man, this article provides detailed information about how to construct an image-based model, as well as how to adopt it into well-tested  ...  a Faculty Early Career Development Award (BES-9875532), the National Library of Medicine for the Visible Human images, Keith Eckernm at Oak Ridge National Laboratory for his insightful discussions during  ... 
doi:10.1097/00004032-200005000-00003 pmid:10772019 fatcat:kdnqqksqwbd5dausolgh4q3cli

OntoVIP: An Ontology for the Annotation of Object Models Used for Medical Image Simulation

Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frederic Cervenansky, Patrick Clarysse, Denis Friboulet, Alban Gaignard, Patrick Hugonnard, Carole Lartizien, Herve Liebgott, Johan Montagnat, Joachim Tabary (+1 others)
2012 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology  
This paper describes the creation of a comprehensive conceptualization of object models used in medical image simulation, suitable for major imaging modalities and simulators.  ...  The goal is to create an application ontology that can be used to annotate the models in a repository integrated in the Virtual Imaging Platform (VIP), to facilitate their sharing and reuse.  ...  CONFLICT OF INTEREST The authors declare that they do not have any conflict of interest concerning the works reported in this paper.  ... 
doi:10.1109/hisb.2012.35 dblp:conf/hisb/GibaudFBCCFGHLLMTG12 fatcat:4uxasaw5ozc5pmj37ib754ayzy

OntoVIP: An ontology for the annotation of object models used for medical image simulation

Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frédéric Cervenansky, Patrick Clarysse, Denis Friboulet, Alban Gaignard, Patrick Hugonnard, Carole Lartizien, Hervé Liebgott, Johan Montagnat, Joachim Tabary (+1 others)
2014 Journal of Biomedical Informatics  
This paper describes the creation of a comprehensive conceptualization of object models used in medical image simulation, suitable for major imaging modalities and simulators.  ...  The goal is to create an application ontology that can be used to annotate the models in a repository integrated in the Virtual Imaging Platform (VIP), to facilitate their sharing and reuse.  ...  A list of terms (e.g. brain, heart), present in existing simulation models, was used to determine the concepts to extract from FMA (e.g. fma:Brain, fma:Heart).  ... 
doi:10.1016/j.jbi.2014.07.008 pmid:25038553 pmcid:PMC5943577 fatcat:33kxzx22ozgw5airtyltyfmlyi

Domain-specific summarization of Life-Science e-experiments from provenance traces

Alban Gaignard, Johan Montagnat, Bernard Gibaud, Germain Forestier, Tristan Glatard
2014 Journal of Web Semantics  
Our approach has been implemented in the Virtual Imaging Platform (VIP) and experimental results show the feasibility of producing few domain-specific statements which opens new data sharing and repurposing  ...  The instrumentation of e-Science platforms with provenance tracking techniques provide useful information from a data analysis process design or debugging perspective.  ...  We thank the European Grid Initiative and "France-Grilles".  ... 
doi:10.1016/j.websem.2014.07.001 fatcat:imva7ugy7zdo7c6rjnpbzwpyri

A novel medical image data-based multi-physics simulation platform for computational life sciences

E. Neufeld, D. Szczerba, N. Chavannes, N. Kuster
2013 Interface Focus  
Subject Areas: computational biology, biomedical engineering Simulating and modelling complex biological systems in computational life sciences requires specialized software tools that can perform medical  ...  This simulation platform consists of detailed, parametrized anatomical models, a segmentation and meshing tool, a wide range of solvers and optimizers, a framework for the rapid development of specialized  ...  Anatomical models For simulations involving anatomical models, either the existing virtual population (ViP) [4] models can be used, or new models can be segmented on the basis of medical image data (  ... 
doi:10.1098/rsfs.2012.0058 pmid:24427518 pmcid:PMC3638470 fatcat:w34zkidepncjnjpvnecqm5e5je

Guest Editorial Special Issue on Medical Imaging and Image Computing in Computational Physiology

Alejandro F. Frangi, D. Rod Hose, Peter J. Hunter, Nicholas Ayache, Dana Brooks
2013 IEEE Transactions on Medical Imaging  
Glatard et al. present the Virtual Imaging Platform (VIP), a platform accessible via the web to facilitate the sharing of object models and multimodality medical image simulators, and to provide access  ...  The third category of papers deals with computational methods for simulating medical imagery and incorporate knowledge of imaging physics and physiology/biophysics.  ... 
doi:10.1109/tmi.2012.2234320 pmid:23409282 fatcat:3y6w5uwdera45lse2js4gif7da

Advances in Computational Human Phantoms and Their Applications in Biomedical Engineering—A Topical Review

Wolfgang Kainz, Esra Neufeld, Wesley E. Bolch, Christian G. Graff, Chan Hyeong Kim, Niels Kuster, Bryn Lloyd, Tina Morrison, Paul Segars, Yeon Soo Yeom, Maria Zankl, X. George Xu (+1 others)
2019 IEEE Transactions on Radiation and Plasma Medical Sciences  
Because many of these CHPs are increasingly providing data for regulatory submissions of various medical devices, the validity, anatomical accuracy, and availability to cover the entire patient population  ...  The article is organized into two main sections: the first section reviews the different modeling techniques used to create CHPs, whereas the second section discusses various applications of CHPs in biomedical  ...  They are imaged by means of accurate simulation methods, e.g., MC or analytical, with models that emulate the characteristics of the particular imaging modality, instrumentation, and system configuration  ... 
doi:10.1109/trpms.2018.2883437 pmid:30740582 pmcid:PMC6362464 fatcat:p4kq6sj2wbalxdhsfiyhw4bimi

The first MICCAI challenge on PET tumor segmentation

Mathieu Hatt, Baptiste Laurent, Anouar Ouahabi, Hadi Fayad, Shan Tan, Laquan Li, Wei Lu, Vincent Jaouen, Clovis Tauber, Jakub Czakon, Filip Drapejkowski, Witold Dyrka (+9 others)
2018 Medical Image Analysis  
carried out within a MICCAI (Medical Image Computing and Computer Assisted Intervention) challenge.  ...  A major limitation for the field has been the lack of a benchmark dataset that would allow direct comparison of the results in the various publications.  ...  VIP is a web portal for medical simulation and image data analysis.  ... 
doi:10.1016/j.media.2017.12.007 pmid:29268169 pmcid:PMC7460722 fatcat:f6zlbt7gnramvdxf5nyeyfcw24

Current status and new horizons in Monte Carlo simulation of X-ray CT scanners

Habib Zaidi, Mohammad Reza Ay
2007 Medical and Biological Engineering and Computing  
With the advent of powerful computers and parallel processing including Grid technology, the use of Monte Carlo (MC) techniques for radiation transport simulation has become the most popular method for  ...  An overview of existing programs and their useful features will be given together with recent developments in the design of computational anthropomorphic models of the human anatomy.  ...  Acknowledgments This work was supported by the Swiss National Science Foundation under grant SNSF 3100A0-116547. References  ... 
doi:10.1007/s11517-007-0207-9 pmid:17611789 fatcat:pprxtnwmofhwlj5ktxfspjn7q4

Big Heart Data: Advancing Health Informatics Through Data Sharing in Cardiovascular Imaging

Avan Suinesiaputra, Pau Medrano-Gracia, Brett R. Cowan, Alistair A. Young
2015 IEEE journal of biomedical and health informatics  
We also highlight the potential of recent large cardiovascular epidemiological studies enabling collaborative efforts to facilitate data sharing, algorithms benchmarking, disease modeling and statistical  ...  Tools and infrastructure are available to archive anonymous data from a wide range of studies, from descriptive epidemiological data to gigabytes of imaging data.  ...  Acknowledgments The Cardiac Atlas project was supported by Award Number r01hl087773 and r01hl121754 from the National Heart, Lung, and Blood Institute.  ... 
doi:10.1109/jbhi.2014.2370952 pmid:25415993 pmcid:PMC4659497 fatcat:qthe625lpjg5xmuup5rhruwuva

Deep Semantic Segmentation of Natural and Medical Images: A Review [article]

Saeid Asgari Taghanaki, Kumar Abhishek, Joseph Paul Cohen, Julien Cohen-Adad, Ghassan Hamarneh
2020 arXiv   pre-print
sequenced models, weakly supervised, and multi-task methods and provide a comprehensive review of the contributions in each of these groups.  ...  In this review, we categorize the leading deep learning-based medical and non-medical image segmentation solutions into six main groups of deep architectural, data synthesis-based, loss function-based,  ...  medical image simulation of biological models with the virtual imaging platform (VIP).  ... 
arXiv:1910.07655v3 fatcat:uxrrmb3jofcsvnkfkuhfwi62yq

Industrial and Project Presentations [article]

Felipe A. Lozano, Francisco Serón
2003 Eurographics State of the Art Reports  
This volume contains the Industrial and Project Presentations for the 24th annual Conference of the European Association for Computer Graphics, EUROGRAPHICS´03, held in Granada, Spain, between the 1st  ...  and 6th of September 2003.  ...  We thank our project partners Acknowledgements The GAMA project is being supported by grants 1FD97-2158-C04-01 and TIC2002-04166-C03-01 from the European Community and the Spanish Ministry of Science  ... 
doi:10.2312/egid.20031006 fatcat:loh7chebubg2vatd5syfugub24
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