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Multi-Contrast Computed Tomography Healthy Kidney Atlas [article]

Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman
<span title="2020-12-24">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
There is a substantial normal variation of kidney morphometry and appearance across body size, sex, and imaging protocols in abdominal computed tomography (CT).  ...  A volumetric atlas framework is needed to integrate and visualize the variability across scales. However, there is no abdominal and retroperitoneal organs atlas framework for multi-contrast CT.  ...  This study was in part using the resources of the Advanced Computing Center for Research and Education (ACCRE) at Vanderbilt University, Nashville, TN.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2012.12432v2">arXiv:2012.12432v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/q24uyoiaavbydlznmfxpwaw4dm">fatcat:q24uyoiaavbydlznmfxpwaw4dm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201228102644/https://arxiv.org/vc/arxiv/papers/2012/2012.12432v1.pdf" title="fulltext PDF download [not primary version]" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <span style="color: #f43e3e;">&#10033;</span> <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/87/a9/87a90eb405b00beef03bd512677596f560650a40.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2012.12432v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Multi-atlas registration and adaptive hexahedral voxel discretization for fast bioluminescence tomography

Shenghan Ren, Haihong Hu, Gen Li, Xu Cao, Shouping Zhu, Xueli Chen, Jimin Liang
<span title="2016-03-29">2016</span> <i title="The Optical Society"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fxa4hwkh5vf4nejqcsg3pblm5u" style="color: black;">Biomedical Optics Express</a> </i> &nbsp;
The structural information is usually provided by computed tomography (CT) or magnetic resonance imaging (MRI).  ...  A multi-atlas registration method is first adopted to estimate the internal organ distribution of the imaged animal.  ...  It should be noted that this study constructed mouse atlases only using healthy mice.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1364/boe.7.001549">doi:10.1364/boe.7.001549</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27446674">pmid:27446674</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4929660/">pmcid:PMC4929660</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nbasf6hit5edjf2k73hub3zfs4">fatcat:nbasf6hit5edjf2k73hub3zfs4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200206194052/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4929660&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/76/d0/76d0c9dc167ba43d80f65fd84bb8f67bd3b2502e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1364/boe.7.001549"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929660" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Estimation of Mouse Organ Locations Through Registration of a Statistical Mouse Atlas With Micro-CT Images

Hongkai Wang, David B. Stout, Arion F. Chatziioannou
<span title="">2012</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/yhnt2pif75h2bmnnmdg7m6nlc4" style="color: black;">IEEE Transactions on Medical Imaging</a> </i> &nbsp;
statistical atlas is more accurate than the single atlases.  ...  Micro computed tomography (micro-CT) is an important technology that provides in vivo anatomy of the animal body [1].  ...  Multi-subject atlases have already gained success in human image registration [21] , [22] and mouse brain and kidney image analysis [23] - [25] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tmi.2011.2165294">doi:10.1109/tmi.2011.2165294</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21859613">pmid:21859613</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3267384/">pmcid:PMC3267384</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/p6fz6asq6nf7bjjkx7sxpcrcia">fatcat:p6fz6asq6nf7bjjkx7sxpcrcia</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200206092132/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3267384&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/79/20/7920832512b625446a9ae228182ec941ae1afc3a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/tmi.2011.2165294"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267384" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Tissue segmentation: a crucial tool for quantitative MRI and visualization of anatomical structures

Fritz Schick
<span title="">2016</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nmniume7n5f3jkrtvblj5hbf2e" style="color: black;">Magnetic Resonance Materials in Physics, Biology and Medicine</a> </i> &nbsp;
Furthermore, artificial signals which Abstract Automatic or semi-automatic segmentation of tissue types or organs is well established for X-ray-based computed tomography, with its fixed grey-scale and  ...  Medical image segmentation usually works well in two-dimensional or three-dimensional data sets with high contrast between the tissue classes to be separated.  ...  The information in the reference atlases can be consolidated into a single atlas (statistical atlas) or can be used in a multi-atlas approach with majority voting.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10334-016-0549-0">doi:10.1007/s10334-016-0549-0</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27052370">pmid:27052370</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/kn447b5d3ngxxmkbobfhr27tha">fatcat:kn447b5d3ngxxmkbobfhr27tha</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20181030101149/https://link.springer.com/content/pdf/10.1007%2Fs10334-016-0549-0.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f1/a4/f1a4d4a393cdaba0593c170b60a04a1eaae65498.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10334-016-0549-0"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Front Matter: Volume 10578

Barjor Gimi, Andrzej Krol
<span title="2018-06-27">2018</span> <i title="SPIE"> Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging </i> &nbsp;
template matching and region growing [10578-98] 10578 2R Automatic coronary artery lumen segmentation in computed tomography angiography using paired multi-scale 3D CNN [10578-99] Proc. of SPIE Vol. 10578  ...  [10578-33] 10578 0Z Dynamic cone beam x-ray luminescence computed tomography with principal component analysis [10578-34] 10578 10 A fast reconstruction algorithm for fluorescence molecular tomography  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1117/12.2323952">doi:10.1117/12.2323952</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/om4wezsn3vgr7mebecadzuy5ly">fatcat:om4wezsn3vgr7mebecadzuy5ly</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190427065159/https://www.spiedigitallibrary.org/conference-proceedings-of-spie/10578/1057801/Front-Matter-Volume-10578/10.1117/12.2323952.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ed/2e/ed2e24f56de82cd60a2ddcb2ba295704e889f5fe.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1117/12.2323952"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

MARS: a mouse atlas registration system based on a planar x-ray projector and an optical camera

Hongkai Wang, David B Stout, Richard Taschereau, Zheng Gu, Nam T Vu, David L Prout, Arion F Chatziioannou
<span title="2012-09-12">2012</span> <i title="IOP Publishing"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zuggg3zvsfaatpw6invuoevl7a" style="color: black;">Physics in Medicine and Biology</a> </i> &nbsp;
To facilitate the registration, a statistical atlas that accounts for inter-subject anatomical variations was constructed based on 83 organ-labeled mouse micro-computed tomography (CT) images.  ...  systems such as positron emission tomography (PET).  ...  A provisional patent application describing parts of the 2D/3D atlas registration has been filed (UCLA Case No. 2011-395).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1088/0031-9155/57/19/6063">doi:10.1088/0031-9155/57/19/6063</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22968224">pmid:22968224</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3462445/">pmcid:PMC3462445</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/efvqutsytvbk7a3yllqzsf4o6u">fatcat:efvqutsytvbk7a3yllqzsf4o6u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171025102356/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3462445&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ed/3b/ed3b4c9d897f0e2ccd832d4e612eaa8681bede0f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1088/0031-9155/57/19/6063"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> iop.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3462445" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Statistical 4D graphs for multi-organ abdominal segmentation from multiphase CT

Marius George Linguraru, John A. Pura, Vivek Pamulapati, Ronald M. Summers
<span title="2012-02-11">2012</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kpkfymbkufcnzjfc5ydyokby4y" style="color: black;">Medical Image Analysis</a> </i> &nbsp;
Then 4D convolution using population training information of contrast-enhanced liver, spleen and kidneys was applied to multiphase data to initialize the 4D graph and adapt to patient-specific data.  ...  The interpretation of medical images benefits from anatomical and physiological priors to optimize computer-aided diagnosis applications.  ...  Contrast-enhanced CT has proven exceptionally useful to improving diagnosis due to the ability to differentiate tumors from healthy tissue.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2012.02.001">doi:10.1016/j.media.2012.02.001</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22377657">pmid:22377657</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3322299/">pmcid:PMC3322299</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/q24sslywtzg35nvvugkfmqpcwi">fatcat:q24sslywtzg35nvvugkfmqpcwi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200206163840/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3322299&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/71/34/71345bfa2d3299f88676ae503cff39a79af91eeb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2012.02.001"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3322299" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Bioluminescence tomography with structural information estimated via statistical mouse atlas registration

Bin Zhang, Wanzhou Yin, Hao Liu, Xu Cao, Hongkai Wang
<span title="2018-07-05">2018</span> <i title="The Optical Society"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fxa4hwkh5vf4nejqcsg3pblm5u" style="color: black;">Biomedical Optics Express</a> </i> &nbsp;
Due to an ill-posed and underestimated characteristic of bioluminescence tomography (BLT) reconstruction, a priori anatomical information obtained from computed tomography (CT) or magnetic resonance imaging  ...  Then the other organs, such as the liver and kidney, were determined automatically through the statistical mouse atlas model.  ...  The multi-atlas was constructed from 50 manually segmented CT images.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1364/boe.9.003544">doi:10.1364/boe.9.003544</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30338139">pmid:30338139</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6191626/">pmcid:PMC6191626</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2y7phlzflfd3bnhr37swok3o5y">fatcat:2y7phlzflfd3bnhr37swok3o5y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200206153342/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6191626&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b4/01/b40179d1af0b5030a1b9192e42d9332d1c57a7dc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1364/boe.9.003544"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191626" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Abdominal multi-organ segmentation with cascaded convolutional and adversarial deep networks [article]

Pierre-Henri Conze, Ali Emre Kavur, Emilie Cornec-Le Gall, Naciye Sinem Gezer, Yannick Le Meur, M. Alper Selver, François Rousseau
<span title="2020-01-26">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Results : Employed for healthy liver, kidneys and spleen segmentation, our pipeline provides promising results by outperforming state-of-the-art encoder-decoder schemes.  ...  Objective : Abdominal anatomy segmentation is crucial for numerous applications from computer-assisted diagnosis to image-guided surgery.  ...  However, the analysis of Computed Tomography (CT) and Magnetic Resonance (MR) abdominal imaging datasets is CT T1DUALin T1DUALout T2SPIR -liver -right kidney -left kidney -spleen Fig. 1 : Samples of healthy  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2001.09521v1">arXiv:2001.09521v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rzfqajt7dbchjcj5ooinzhbkja">fatcat:rzfqajt7dbchjcj5ooinzhbkja</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200321180930/https://arxiv.org/pdf/2001.09521v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2001.09521v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Regression Forests for Efficient Anatomy Detection and Localization in CT Studies [chapter]

Antonio Criminisi, Jamie Shotton, Duncan Robertson, Ender Konukoglu
<span title="">2011</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
This paper proposes multi-class random regression forests as an algorithm for the efficient, automatic detection and localization of anatomical structures within three-dimensional CT scans.  ...  (a) The automatically computed bounding box for a healthy left kidney rendered in 3D. (b) As before but for a diseased kidney. (c) Automatically localized liver showing hemangiomas.  ...  tomography (CT) studies.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-18421-5_11">doi:10.1007/978-3-642-18421-5_11</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/p7o4jx62vvdyjf2huodsaimcui">fatcat:p7o4jx62vvdyjf2huodsaimcui</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160701200516/http://www.wisdom.weizmann.ac.il/mathusers/vision/courses/2010_2/papers/Criminisi_MICCAI_MCV2010.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b0/01/b001970feea79bbe5512bd1d08e15443fb28ba8c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-18421-5_11"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Kidney Segmentation in CT Data Using Hybrid Level-Set Method with Ellipsoidal Shape Constraints

Andrzej Skalski, Katarzyna Heryan, Jacek Jakubowski, Tomasz Drewniak
<span title="2017-03-01">2017</span> <i title="Walter de Gruyter GmbH"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4gk2jsseargehplehgh3qq3hvi" style="color: black;">Metrology and Measurement Systems</a> </i> &nbsp;
In this paper, we present one of the most important steps towards building such a system: a new approach to kidney segmentation from Computed Tomography data.  ...  The proposed methodology was tested on 10 Computed Tomography scans from patients diagnosed with renal cancer.  ...  Therefore, the preoperative imaging, which is in most cases Computed Tomography (CT) with a contrast agent, is performed to visualize the structures of interest.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1515/mms-2017-0006">doi:10.1515/mms-2017-0006</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7tq3idmavbe53fb23snp6dyfq4">fatcat:7tq3idmavbe53fb23snp6dyfq4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502074356/https://content.sciendo.com/downloadpdf/journals/mms/24/1/article-p101.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bb/5a/bb5a73b7c0a0845c5f046e111ab4877e3b505318.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1515/mms-2017-0006"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> degruyter.com </button> </a>

Comparison of high-resolution synchrotron-radiation-based phase-contrast imaging and absorption-contrast imaging for evaluating microstructure of vascular networks in rat brain: from 2D to 3D views

Hong-Lei Li, Hui Ding, Xian-Zhen Yin, Zhuo-Hui Chen, Bin Tang, Jing-Yan Sun, Xin-Hang Hu, Xinyi Lv, Shun-Tong Kang, Yi-Shu Fan, Tong Wu, Song-Feng Zhao (+2 others)
<span title="2019-09-11">2019</span> <i title="International Union of Crystallography (IUCr)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/opv6emcd4vfpfltyzbw5jnivwq" style="color: black;">Journal of Synchrotron Radiation</a> </i> &nbsp;
Conventional imaging methods such as magnetic resonance imaging, computed tomography and digital subtraction angiography have limited temporospatial resolutions and shortcomings like invasive angiography  ...  Simultaneously, SR-based phase-contrast imaging was used to perform high-quality, multi-dimensional and multi-scale imaging of rat brain angioarchitecture.  ...  papers contrast imaging, validating the use of phase-contrast imaging for brain computed tomography (Croton et al., 2018) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1107/s1600577519011688">doi:10.1107/s1600577519011688</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31721747">pmid:31721747</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nbe6b2v5a5fs5o4qs7vb7sam7m">fatcat:nbe6b2v5a5fs5o4qs7vb7sam7m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200321224210/http://journals.iucr.org/s/issues/2019/06/00/hf5384/hf5384.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a0/24/a024719e2f3c9f91e90256d4694d4f26895ceb2f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1107/s1600577519011688"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Mouse Atlas Registration with Non-tomographic Imaging Modalities—a Pilot Study Based on Simulation

Hongkai Wang, David B. Stout, Arion F. Chatziioannou
<span title="2011-10-08">2011</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nes4x2ysovbixokk2bgxvvkzhi" style="color: black;">Molecular Imaging and Biology</a> </i> &nbsp;
Keywords Small animal imaging; Mouse atlas registration; 2D/3D registration; Planar X-ray projection; 3D surface scanner small animal tomographic imaging modalities such as micro-computed tomography (micro-CT  ...  The use of a surface scanner improved the registration accuracy of skin, spleen, and kidneys.  ...  Yuri Boykov for offering publicly available codes of the graph cuts method which was used for mouse atlas and subject phantom construction. We also acknowledge Dr.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11307-011-0519-x">doi:10.1007/s11307-011-0519-x</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21983855">pmid:21983855</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3340486/">pmcid:PMC3340486</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7ubfdgr4mnfgjmqhed6zktkkwu">fatcat:7ubfdgr4mnfgjmqhed6zktkkwu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200209095648/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3340486&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/48/7b/487b92434ec4468a44e9111981980cbcf08f45ff.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11307-011-0519-x"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3340486" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A method of 2D/3D registration of a statistical mouse atlas with a planar X-ray projection and an optical photo

Hongkai Wang, David B. Stout, Arion F. Chatziioannou
<span title="2013-03-05">2013</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kpkfymbkufcnzjfc5ydyokby4y" style="color: black;">Medical Image Analysis</a> </i> &nbsp;
To register the high contrast organs, a 2D-registration-back-projection strategy is used that deforms the 3D atlas based on the 2D registrations of the atlas projections.  ...  For registration, a hierarchical approach is applied which first registers high contrast organs, and then estimates low contrast organs based on the registered high contrast organs.  ...  Lelieveldt for providing the online resource of the articulated mouse atlas, Dr. Stefan Klein and Dr. Marius Staring for providing the elastix registration toolbox, and Dr.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2013.02.009">doi:10.1016/j.media.2013.02.009</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23542374">pmid:23542374</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3667217/">pmcid:PMC3667217</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/b2uidnchl5hlrceeufipwrtkwa">fatcat:b2uidnchl5hlrceeufipwrtkwa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200503192753/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3667217&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/cf/f1/cff131d79fd382e09cbe46bd49a4d5de2a741d67.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2013.02.009"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3667217" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Advances in Multimodal Data Fusion in Neuroimaging: Overview, Challenges, and Novel Orientation

Yu-Dong Zhang, Zhengchao Dong, Shui-Hua Wang, Xiang Yu, Xujing Yao, Qinghua Zhou, Hua Hu, Min Li, Carmen Jiménez-Mesa, Javier Ramirez, Francisco J. Martinez, Juan Manuel Gorriz
<span title="2020-07-17">2020</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/u3qqmkiofjejrnpdxh3hdgssm4" style="color: black;">Information Fusion</a> </i> &nbsp;
Neuroimaging fusion can achieve higher temporal and spatial resolution, enhance contrast, correct imaging distortions, and bridge physiological and cognitive information.  ...  specific neurological diseases, (3) strengths and limitations of available imaging modalities, (4) fundamental fusion rules, (5) fusion quality assessment methods, and (6) the applications of fusion for atlas-based  ...  emission computed tomography (SPECT).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.inffus.2020.07.006">doi:10.1016/j.inffus.2020.07.006</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32834795">pmid:32834795</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7366126/">pmcid:PMC7366126</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3cmhcplb5bf2fgpx3kukifbj74">fatcat:3cmhcplb5bf2fgpx3kukifbj74</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200905045940/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC7366126&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c6/72/c672fe43b354a25608b78bf4085c49100bbde6e0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.inffus.2020.07.006"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7366126" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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