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Model-based multiscale detection of 3D vessels

K. Krissian, G. Maladain, R. Vaillant, Y. Trousset, N. Ayache
Proceedings. 1998 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Cat. No.98CB36231)  
doi:10.1109/cvpr.1998.698683 dblp:conf/cvpr/KrissianMAVT98 fatcat:dlla3qxsfraezdrfx6xvwl7uhm

Improved vessel enhancement for fully automatic coronary modeling

Vincent Auvray, Uwe Jandt, Raoul Florent, Dirk Schäfer, Josien P. W. Pluim, Benoit M. Dawant
2009 Medical Imaging 2009: Image Processing  
3D coronary modeling extracts the centerlines and width of the coronary arteries from a rotational sequence of angiographies.  ...  It keeps the advantages of Hessian-based extraction methods (speed, robustness, multiscale) while bypassing its more important limitations: the blurring of bifurcations, and the incomplete filling of very  ...  First, a novel multiscale Hessian-based vessel enhancement method was proposed.  ... 
doi:10.1117/12.810144 dblp:conf/miip/AuvrayJFS09 fatcat:gn64eosflvej7ayyyj7nsa6s3e

Frangi Goes US : Multiscale Tubular Structure Detection Adapted to 3D Ultrasound [chapter]

Paulo Waelkens, Seyed-Ahmad Ahmadi, Nassir Navab
2012 Lecture Notes in Computer Science  
We propose a Hessian matrix based multiscale tubular structure detection (TSD) algorithm adapted to 3D B-mode vascular US images.  ...  Based on this statistic, we compare the Frangi Filter to various versions of our new algorithm, on 11 3D US carotid datasets.  ...  We propose a Hessian matrix based multiscale tubular structure detection (TSD) algorithm adapted to 3D B-mode vascular US images.  ... 
doi:10.1007/978-3-642-33415-3_77 fatcat:db76wnagivckzpeuq73q3htwbu

Multiscale Vessel Segmentation: A Level Set Approach [chapter]

Gang Yu, Yalin Miao, Peng Li, Zhengzhong Bian
2005 Lecture Notes in Computer Science  
This technique is based on the active contour model that evolves according to the geometric measure of vessel structures.  ...  This multiscale method is more efficient for the segmentation of vessel and line-like structures than the conventional active contour methods.  ...  Acknowledgement The paper is supported by the National Natural Science Foundation of China under Grant No. 60271022, 60271025.  ... 
doi:10.1007/11578079_73 fatcat:qbkiszlbrbho7dhk55qlwhi3hu

Automated three-dimensional choroidal vessel segmentation of 3D 1060 nm OCT retinal data

Vedran Kajić, Marieh Esmaeelpour, Carl Glittenberg, Martin F. Kraus, Joachim Honegger, Richu Othara, Susanne Binder, James G. Fujimoto, Wolfgang Drexler
2012 Biomedical Optics Express  
A fully automated, robust vessel segmentation algorithm has been developed for choroidal OCT, employing multiscale 3D edge filtering and projection of "probability cones" to determine the vessel "core"  ...  Based on the ideal vessel response after registration and multiscale filtering, with computed depth related SNR, the vessel core estimate is dilated to quantify the full vessel diameter.  ...  Parametric models are the most promising approach, especially if based on multiscale detection.  ... 
doi:10.1364/boe.4.000134 pmid:23304653 pmcid:PMC3539191 fatcat:fsdrvhuimzawvgiu3fykpgzgpe

A non-parametric vessel detection method for complex vascular structures

Xiaoning Qian, Matthew P. Brennan, Donald P. Dione, Wawrzyniec L. Dobrucki, Marcel P. Jackowski, Christopher K. Breuer, Albert J. Sinusas, Xenophon Papademetris
2009 Medical Image Analysis  
Most common methods for the detection of vessels in these images, such as multiscale Hessian-based operators and matched filters, rely on the assumption that at each voxel there is a single cylinder.  ...  The new method enables us to detect vessels even near complex extreme points, including branching points.  ...  Acknowledgement The authors would like to thank Donna Dione for her help with the manual segmentation of the lamb MRA images.  ... 
doi:10.1016/j.media.2008.05.005 pmid:18678521 pmcid:PMC2614119 fatcat:o2ftqb5l4beq5mu2zcrn43ewse

A Novel Robust Tube Detection Filter for 3D Centerline Extraction [chapter]

Thomas Pock, Reinhard Beichel, Horst Bischof
2005 Lecture Notes in Computer Science  
The method is based on a novel multiscale medialness function and additionally provides an accurate estimate of tubular radius.  ...  Centerline extraction of tubular structures such as blood vessels and airways in 3D volume data is of vital interest for applications involving registration, segmentation and surgical planing.  ...  For 3D applications, such as visualization, segmentation or registration, the detection of vessel centerlines together with radius estimation is an useful preprocessing step.  ... 
doi:10.1007/11499145_49 fatcat:pusl5g35kjcl5durpjgers44c4

Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images [article]

Shuaa S. Alharbi, Cigdem Sazak, Carl J. Nelson, Boguslaw Obara
2019 arXiv   pre-print
A wide range of biomedical applications requires enhancement, detection, quantification and modelling of curvilinear structures in 2D and 3D images.  ...  Here, we propose the Multiscale Top-Hat Tensor (MTHT) approach, which combines multiscale morphological filtering with a local tensor representation of curvilinear structures in 2D and 3D images.  ...  The details of the proposed approach are given below. 1) Multiscale Top-Hat Transform: For a given 2D/3D grayscale image I(p), where p donates the pixel position, a stack of 2D/3D line structuring elements  ... 
arXiv:1809.08678v2 fatcat:24cs7tghhvgwdmieht7dyk5yxy

Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images

Shuaa S. Alharbi, Cigdem Sazak, Carl J. Nelson, Boguslaw Obara
2018 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)  
A wide range of biomedical applications require enhancement, detection, quantification and modelling of curvilinear structures in 2D and 3D images.  ...  Here, we propose the Multiscale Top-Hat Tensor (MTHT) approach, which combines multiscale morphological filtering with a local tensor representation of curvilinear structures in 2D and 3D images.  ...  of junctions should be explored further. 1 ) 1 Multiscale Top-Hat Transform: For a given 2D/3D grayscale image I(p), where p donates the pixel position, a stack of 2D/3D line structuring elements B σi  ... 
doi:10.1109/bibm.2018.8621329 dblp:conf/bibm/AlharbiSNO18 fatcat:beqgzd4pjjfzpi4gpihpllli54

Thin structure segmentation and visualization in three-dimensional biomedical images: a shape-based approach

A. Huang, G.M. Nielson, Anshuman Razdan, G.E. Farin, D.P. Baluch, D.G. Capco
2006 IEEE Transactions on Visualization and Computer Graphics  
This paper presents a shape-based approach in extracting thin structures, such as lines and sheets, from three-dimensional (3D) biomedical images.  ...  Hessian-based shape methods are reviewed. A synthesized linear structure is used to evaluate the sensitivity of multiscale filtering approach in extracting closely positioned fibers.  ...  This paper reviews shape-related work and examines the Hessian-based multiscale filtering approach in extracting thin structures, such as lines and sheets, from 3D biomedical images.  ... 
doi:10.1109/tvcg.2006.15 pmid:16382611 fatcat:sjyldukr6nfvtjplemfbf7sksu

Automated extraction of blood vessel networks from 3D microscopy image stacks via multi-scale principal curve tracing

Erhan Bas, Nastaran Ghadarghadar, Deniz Erdogmus
2011 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro  
Several image processing methods have been proposed for vessel extraction in many domains including those that explore the use of pattern recognition techniques, model-based approaches, tracking based  ...  Blood vessel segmentation, that is, extraction of the center lines and corresponding local cylinder radii are important for the study of vascular diseases, and in the brain also important for the modeling  ...  The resulting network structure is used for 3D reconstruction; skeleton-based approaches have been primarily applied on 3D CT images [2] .  ... 
doi:10.1109/isbi.2011.5872652 dblp:conf/isbi/BasGE11 fatcat:46zmc57a2jdh5jtmlltqcpoahi

A Multiscale Tracking Algorithm for the Coronary Extraction in MSCT Angiography

G. Yang, A. Bousse, C. Toumoulin, H. Shu
2006 2006 International Conference of the IEEE Engineering in Medicine and Biology Society  
The proposed approach makes use of a tracking algorithm of the vascular structure, combining a 3D geometric moment operator with a multiscale Hessian filter to estimate the vessel central axis location  ...  The method performs at the same time, a bifurcation detection to reconstitute the structure of the coronary network.  ...  CONCLUSION An efficient model-based solution has been proposed for the 3-D tracking of vessels in MSCT volumes.  ... 
doi:10.1109/iembs.2006.260712 pmid:17946544 pmcid:PMC2075537 fatcat:7p76wmcaxrhirpfj4cvpoyfiei

Retinal Image Graph-Cut Segmentation Algorithm Using Multiscale Hessian-Enhancement-Based Nonlocal Mean Filter

Jian Zheng, Pei-Rong Lu, Dehui Xiang, Ya-Kang Dai, Zhao-Bang Liu, Duo-Jie Kuai, Hui Xue, Yue-Tao Yang
2013 Computational and Mathematical Methods in Medicine  
We propose a new method to enhance and extract the retinal vessels. First, we employ a multiscale Hessian-based filter to compute the maximum response of vessel likeness function for each pixel.  ...  By this step, blood vessels of different widths are significantly enhanced.  ...  First, we perform a novel multiscale Hessian-based filter to compute the maximum response of vessel likeness function for each pixel, which is used to enhance the blood vessels of gray retinal images.  ... 
doi:10.1155/2013/927285 pmid:23662164 pmcid:PMC3639648 fatcat:ztwo5jrbi5cozi5hffkijnbp3q

A review of vessel extraction techniques and algorithms

Cemil Kirbas, Francis Quek
2004 ACM Computing Surveys  
We have divided vessel segmentation algorithms and techniques into six main categories: (1) pattern recognition techniques, (2) model-based approaches, (3) tracking-based approaches, (4) artificial intelligence-based  ...  approaches, (5) neural network-based approaches, and (6) tube-like object detection approaches.  ...  It is reported that the model successfully estimates the diameters in the range of 0.4 mm to 4.0 mm. Krissian et al. [1998] develop a multiscale model to extract and reconstruct 3D vessels.  ... 
doi:10.1145/1031120.1031121 fatcat:7zms3avnjrfd7plwcitqx3cdiq

A review of 3D vessel lumen segmentation techniques: Models, features and extraction schemes

David Lesage, Elsa D. Angelini, Isabelle Bloch, Gareth Funka-Lea
2009 Medical Image Analysis  
We first detail model-based assumptions on the vessel appearance and geometry which can embedded in a segmentation approach.  ...  Each component (model, feature and extraction scheme) plays a crucial role toward the efficient, robust and accurate segmentation of vessels of interest.  ...  They rely on two shifted, oriented Gaussian derivative kernels to detect parallel vessel walls. A multiscale scheme handles varying vessel widths.  ... 
doi:10.1016/j.media.2009.07.011 pmid:19818675 fatcat:rroixlliubb6nfmvlhahdqtniq
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