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MoClo planner: Interactive visualization for Modular Cloning bio-design

Orit Shaer, Consuelo Valdes, Sirui Liu, Kara Lu, Traci L. Haddock, Swapnil Bhatia, Douglas Densmore, Robert Kincaid
2013 2013 IEEE Symposium on Biological Data Visualization (BioVis)  
MoClo Planner is an interactive visualization system for collaborative bio-design, utilizing a multi-touch interactive surface.  ...  The system integrates the information gathering, design, and specification of complex synthetic biological constructs using the Modular Cloning (MoClo) assembly method.  ...  THE MOCLO PLANNER SYSTEM Informed by these requirements, we designed and implemented MoClo Planner, a collaborative, multi-touch visualization for Modular Cloning Bio-Design.  ... 
doi:10.1109/biovis.2013.6664347 dblp:conf/biovis/ShaerVLLHBDK13 fatcat:y52k6uzdovbh7ale3r34factcm

Designing reality-based interfaces for experiential bio-design

Orit Shaer, Consuelo Valdes, Sirui Liu, Kara Lu, Kimberly Chang, Wendy Xu, Traci L. Haddock, Swapnil Bhatia, Douglas Densmore, Robert Kincaid
2013 Personal and Ubiquitous Computing  
Second, we reflect on the design, implementation, and validation of two case studies of RBIs for synthetic biology: 1) MoClo Planner -a multi-touch interface for collaborative bio-design; 2) SynFlo -a  ...  We also survey related work on bioinformatics tools for bio-design.  ...  MoClo Planner The MoClo Planner is a collaborative, multi-touch bio-design tool that simplifies the information gathering, design, and specification of complex biological constructs using the Modular Cloning  ... 
doi:10.1007/s00779-013-0752-1 fatcat:h4ata35znbgxdby7tvgkbqldja

ePARTS: An easy way to store and access your MoClo construct information in plant biotechnology projects

Pardo, Caro
2017 unpublished
The use of modular cloning techniques like MoClo has become very popular in plant biotechnology projects that deal with the creation of multigenic constructs.  ...  The storage of the complex information related to these constructs is absolutely essential and we found that there are no free tools designed specifically for MoClo constructs available.  ...  The Modular Cloning System for Standardized Assembly of Multigene Constructs (MoClo) was released in 2011 [16, 17] .  ... 
fatcat:vojfuo3lpzgthbfy3qsekbjzgq