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Mismatch sampling

Raphaël Clifford, Klim Efremenko, Benny Porat, Ely Porat, Amir Rothschild
2012 Information and Computation  
Further, we guarantee that the mismatches are sampled uniformly and can therefore be seen as representative of the types of mismatches that occur.  ...  Our interest is different in that we wish to collect a random sample of mismatches of fixed size at each position in the text.  ...  The mismatch sampling algorithm We are now able to present the main mismatch sampling algorithm. This will be done in two phases.  ... 
doi:10.1016/j.ic.2012.02.007 fatcat:avdp5yoo55anjnt22kklxrjswu

Mismatch Sampling [chapter]

Raphaël Clifford, Klim Efremenko, Benny Porat, Ely Porat, Amir Rothschild
2008 Lecture Notes in Computer Science  
Further, we guarantee that the mismatches are sampled uniformly and can therefore be seen as representative of the types of mismatches that occur. *  ...  Our interest is different in that we wish to collect a random sample of mismatches of fixed size at each position in the text.  ...  Mismatch Sampling in O((c + log n)(n + m log m) log m) time We now show the final speedup and give the full mismatch sampling algorithm.  ... 
doi:10.1007/978-3-540-89097-3_11 fatcat:gvhxnmrafnfxpftx4hlziizdkm

Analysis of the SNR loss distribution with covariance mismatched training samples [article]

Olivier Besson
2020 arXiv   pre-print
We analyze the distribution of the signal to noise ratio (SNR) loss at the output of an adaptive filter which is trained with samples that do not share the same covariance matrix as the samples for which  ...  Our objective is to find an accurate approximation of the distribution of the SNR loss which has a similar form as in the case of no mismatch.  ...  The recent paper [17] is the first to address the effect of covariance mismatched training samples for arbitrary Σ t and Σ.  ... 
arXiv:2006.14874v2 fatcat:vwfxvtislffujnugubscdr33ki

Single-base mismatch profiles for NGS samples [article]

Marco Chierici and Giuseppe Jurman and Marco Roncador and Cesare Furlanello
2011 arXiv   pre-print
Within the preprocessing pipeline of a Next Generation Sequencing sample, its set of Single-Base Mismatches is one of the first outcomes, together with the number of correctly aligned reads.  ...  In this note we show that, under the same technological conditions, there is a strong relation between the SBI and the biological nature of the sample.  ...  of zero mismatches.  ... 
arXiv:1109.1108v1 fatcat:hkqs35artrg7rdnd2vpubd3iee

Sufficient condition for the mode mismatch of single photons for scalability of the boson-sampling computer

V. S. Shchesnovich
2014 Physical Review A. Atomic, Molecular, and Optical Physics  
It samples the probability distribution at the output of linear unitary optical network, with indistinguishable single photons at the input.  ...  For scalability of a realistic boson sampler with current technology it is necessary to know the effect of the photon mode mismatch on its operation.  ...  Whereas the universal quantum computer targets the NP decision problems, widely believed to be classically hard, such as factoring large integers [6, 7] , the BS computer just samples the output probability  ... 
doi:10.1103/physreva.89.022333 fatcat:ic5z5sx2k5dnfcttgx3tsqeb2y

Impact of covariance mismatched training samples on constant false alarm rate detectors [article]

Olivier Besson
2020 arXiv   pre-print
training samples.  ...  We consider a class of constant false alarm rate detectors which depend on two statistics (β,) whose distribution is parameter-free in the case of no mismatch and we analyze the impact of covariance mismatched  ...  The number of training samples is set to K = 2N . We will consider two different covariance mismatches.  ... 
arXiv:2012.01182v1 fatcat:6ckwq6l5vbcnxdcwdl64brpxhm

SNP Discovery in Pooled Samples With Mismatch Repair Detection

H. Fakhrai-Rad
2004 Genome Research  
We here describe combining mismatch repair detection (MRD) with dideoxy terminator sequencing to detect SNPs in pooled DNA samples.  ...  MRD enriches for variant alleles in the pooled sample, and sequencing determines the nature of the variants.  ...  We present our utilization of mismatch repair detection (MRD; Faham et al. 2001) to enrich fragments amplified from pooled genomic DNA samples for variant alleles that are then subjected to standard  ... 
doi:10.1101/gr.2373904 pmid:15231755 pmcid:PMC442157 fatcat:4bldcnuucbdlvpkgjprzevgc2a

Retrieving Effective Acoustic Impedance and Refractive Index for Size Mismatch Samples [article]

Mohammad Javad Khodaei, Amin Mehrvarz, Reza Ghaffarivardavagh, Nader Jalili
2021 arXiv   pre-print
In sample 2, r 1 = 51 mm, t = 8 mm, n 1 = 7, and z 1 /z 2 = 10. In these samples r 2 = 70 mm, n 2 = 1 and z 2 = ρ 0 c 0 /π(r 2 2 − r 2 1 ).  ...  Herein, two samples with different dimensions and properties are evaluated. In sample 1, r 1 = 40 mm, t = 5.2 mm, n 1 = 5, and z 1 /z 2 = 15.  ... 
arXiv:2112.13453v1 fatcat:36thwnpp2jaljanje5dltebzvq

Enzymatic Mismatch Cleavage and Agarose Gel Evaluation of Samples [chapter]

Bradley J. Till, Joanna Jankowicz-Cieslak, Owen A. Huynh, Mayada M. Beshir, Robert G. Laport, Bernhard J. Hofinger
2015 Low-Cost Methods for Molecular Characterization of Mutant Plants  
Materials Consumables and equipment for enzymatic mismatch cleavage are listed in Table 6 .1. Methods 1.  ...  Reference Till BJ, Burtner C, Comai L, Henikoff S (2004) Mismatch cleavage by single-strand specific nucleases.  ... 
doi:10.1007/978-3-319-16259-1_6 fatcat:tpvccmcbqbhjlfmal6q6zxv5dy

Calibration for frequency-dependent mismatches in bandpass sampling TIADCs

Nan Li, Xiangyu Liu, Husheng Liu, Yinan Wang
2017 IEICE Electronics Express  
Bandpass sampling (BPS) is a widely used technique where one samples a bandpass-filtered signal at a sampling rate below its Nyquist rate (twice the upper cutoff frequency).  ...  The principle of mismatches compensation is to reconstruct the mismatches-induced spurious components and subtract them from the original TIADC's output.  ...  The state-of-the-art literatures shed much light on the mitigation of mismatches in lowpass sampling (LPS) TIADCs [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12] .  ... 
doi:10.1587/elex.14.20170851 fatcat:cza3w64ykjd3vpg5yzlysg7wee

Global Optimality and Finite Sample Analysis of Softmax Off-Policy Actor Critic under State Distribution Mismatch [article]

Shangtong Zhang, Remi Tachet, Romain Laroche
2021 arXiv   pre-print
Central to our work is the finite sample analysis of a generic stochastic approximation algorithm with time-inhomogeneous update operators on time-inhomogeneous Markov chains, based on its uniform contraction  ...  ., Algorithm 2), yielding a distribution mismatch.  ...  At time step 0, an initial state S 0 is sampled according to p 0 .  ... 
arXiv:2111.02997v1 fatcat:vltn2zg2snfozabivqx4ccaw5u

Effects of basis-mismatch in compressive sampling of continuous sinusoidal signals

Daniel H. Chae, Parastoo Sadeghi, Rodney A. Kennedy
2010 2010 2nd International Conference on Future Computer and Communication  
In this paper, the degradation due to this basis mismatch is investigated and a way to minimize the effects of basis mismatch in compressive sampling of continuous sinusoidal signals is discussed.  ...  The theory of compressive sampling (or compressed sensing) is very attractive in that it is possible to reconstruct some signals with a sub-Nyquist sampling rate provided that they are sparse in some basis  ...  BASIS MISMATCH IN COMPRESSIVE SAMPLING Mismatch between the signal and reconstruction basis domains is very common, but the effects of such mismatch is not studied well in the literature.  ... 
doi:10.1109/icfcc.2010.5497605 fatcat:e7pukuizife4thbmwl7gstqgem

Statistical Spectra and Distortion Analysis of Time-Interleaved Sampling Bandwidth Mismatch

Sai-Weng Sin, U.-F. Chio, U. Seng-Pan, R.P. Martins
2008 IEEE Transactions on Circuits and Systems - II - Express Briefs  
This paper presents a detailed analysis of the effect of sampling bandwidth mismatches in the statistical behavior of time-interleaved sampling systems.  ...  Index Terms-Bandwidth mismatches, sampled-data systems, time-interleaved (TI) analog-to-digital converter (ADC).  ...  Statistical Spectra and Distortion Analysis of Time-Interleaved Sampling Bandwidth Mismatch I.  ... 
doi:10.1109/tcsii.2008.921600 fatcat:sf2z4azylffrhlgd76t5b633mi

Mismatching Removal for Feature-Point Matching Based on Triangular Topology Probability Sampling Consensus

Zaixing He, Chentao Shen, Quanyou Wang, Xinyue Zhao, Huilong Jiang
2022 Remote Sensing  
However, mismatching is inevitable, and it needs to be removed. It is difficult for existing methods to remove a high ratio of mismatches.  ...  To address this issue, a robust method, called triangular topology probability sampling consensus (TSAC), is proposed, which combines the topology network and resampling methods.  ...  We propose a new sampling method-probability sampling consensus-which weights the probability calculated above to the random process of the RANSAC so that the mismatches can be detected and removed.  ... 
doi:10.3390/rs14030706 fatcat:mcdjcion75f2je37v3mkrzihtu

Calibration for Sample-And-Hold Mismatches in M-Channel TIADCs Based on Statistics

Xiangyu Liu, Hui Xu, Yinan Wang, Yingqiang Dai, Nan Li, Guiqing Liu
2019 Applied Sciences  
However, the inevitable sample-and-hold (S/H) mismatches between channels incur undesirable error and then affect the TIADC's dynamic performance.  ...  Time-interleaved analog-to-digital converter (TIADC) is a good option for high sampling rate applications.  ...  /Sample 16-QAM 0.05 f s 10  ... 
doi:10.3390/app9010198 fatcat:bjr76lo7hfcntkfholqma2vw2i
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