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Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data

Susan Higashi, Cyril Fournier, Christian Gautier, Christine Gaspin, Marie-France Sagot
2015 BMC Bioinformatics  
Several methods exist for the prediction of precursor miRNAs (pre-miRNAs) in genomic or sRNA-seq (small RNA sequences) data produced by NGS (Next Generation Sequencing).  ...  , using as input either genomic sequences or sRNA-seq data.  ...  and sRNAseq data of plants.  ... 
doi:10.1186/s12859-015-0594-0 pmid:26022464 pmcid:PMC4448272 fatcat:vf4rmuka4faangigsrimhrpnbq

Computational tools for plant small RNA detection and categorization

Lionel Morgado, Frank Johannes
2017 Briefings in Bioinformatics  
Frank Johannes is an assistant professor for population epigenetics and epigenomics at the Technical University of Munich.  ...  Small RNAs (sRNAs) are important short-length molecules with regulatory functions essential for plant development and plasticity.  ...  generated putative pre-miRNA.  ... 
doi:10.1093/bib/bbx136 pmid:29059285 fatcat:2cgfz3s4tfdx5oo2vwahhq2l3e