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Mindboggle: a scatterbrained approach to automate brain labeling

Arno Klein, Joy Hirsch
<span title="">2005</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
is a fully automated, feature matching approach to label cortical structures and activity anatomically in human brain MRI data.  ...  This approach does not assume that the existence of component structures and their relative spatial relationship is preserved from brain to brain, but instead disassembles a labeled atlas and reassembles  ...  Joy Hirsch, and my four reviewers for proofreading this manuscript; and my wife Deepanjana for indulging my warped logic about this scatterbrained approach.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2004.09.016">doi:10.1016/j.neuroimage.2004.09.016</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15627570">pmid:15627570</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/h52syy47rzf7hbarqqxnyebjli">fatcat:h52syy47rzf7hbarqqxnyebjli</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20060221194706/http://www.fmri.org:80/pdfs/Klein%20&amp;%20Hirsch%202005.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0f/2b/0f2b953dd0b53d240c87ad7c26ae8a4d9affdabb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2004.09.016"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Mindboggling morphometry of human brains

Arno Klein, Satrajit S. Ghosh, Forrest S. Bao, Joachim Giard, Yrjö Häme, Eliezer Stavsky, Noah Lee, Brian Rossa, Martin Reuter, Elias Chaibub Neto, Anisha Keshavan, Dina Schneidman
<span title="2017-02-23">2017</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ch57atmlprauhhbqdf7x4ytejm" style="color: black;">PLoS Computational Biology</a> </i> &nbsp;
Mindboggle (http://mindboggle.info) is an open source brain morphometry platform that takes in preprocessed T1-weighted MRI data and outputs volume, surface, and tabular data containing label, feature,  ...  Mindboggle computes a variety of (primarily surface-based) shapes: area, volume, thickness, curvature, depth, Laplace-Beltrami spectra, Zernike moments, etc.  ...  Acknowledgments We sincerely thank everyone who has contributed to the Mindboggle open science project over the years, including Nolan Nichols, Oliver Hinds, Arthur Mikhno, Hal Canary, and Ben Cipollini  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1005350">doi:10.1371/journal.pcbi.1005350</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28231282">pmid:28231282</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5322885/">pmcid:PMC5322885</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lsqa2kigtzfivlkqzrnmkri37u">fatcat:lsqa2kigtzfivlkqzrnmkri37u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171015155757/http://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005350&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/7f/b6/7fb63fd4eb07480376e48bc81aabc1948d8167c1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1005350"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322885" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Data-Visual Relationships to Subject Performance and Eye Movements

Arno Klein
<span title="2016-04-13">2016</span> <i title="Pensoft Publishers"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dggut6cprnfkfloibuzvaibabe" style="color: black;">Research Ideas and Outcomes</a> </i> &nbsp;
A data taxonomy and novel visual taxonomy will be used to select visual stimuli from a database of acquired and newly generated information graphics.  ...  However, there is not yet a satisfactory formal methodology for selecting the most appropriate visualization method for a given set of data.  ...  Mindboggle: A scatterbrained approach to automate brain labeling. NeuroImage. 24(2): 261-280.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3897/rio.2.e8814">doi:10.3897/rio.2.e8814</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/n757qu2fezgypg6rrls2f5gq3i">fatcat:n757qu2fezgypg6rrls2f5gq3i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180721201210/https://riojournal.com/lib/ajax_srv/generate_pdf.php?document_id=8814&amp;readonly_preview=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/cf/7f/cf7fc754cc2a9a47a5e55849a47235a3a5460683.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3897/rio.2.e8814"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

CPR画像における角度情報を利用した脳腫瘍症例の中心溝位置推定
Angle-Based Identification of the Central Sulcus in Patients With Brain Tumors Using CPR Images

Ikuko UWANO, Masashi KAMEDA, Takashi INOUE, Hideaki NISHIMOTO, Kuniaki OGASAWARA, Akira OGAWA
<span title="">2009</span> <i title="The Japanese Society of Medical Imaging Technology"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vjsh2o3grvhhhcl4or2vfmmggy" style="color: black;">Medical Imaging Technology</a> </i> &nbsp;
D, Wegenkittl R et al: CPR: 〔 4 〕 Klein A, Hirsch J: Mindboggle: a scatterbrained approach to automate brain labeling.  ...  We therefore propose a new approach to address this issue by a ′ .  ...  In comparison with the previous method, this new approach can more accurately identify the most likely candidates for the central sulcus in patients with brain tumors.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11409/mit.27.332">doi:10.11409/mit.27.332</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4sa2zqzl3nfhdax354mzta46x4">fatcat:4sa2zqzl3nfhdax354mzta46x4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220326035517/https://www.jstage.jst.go.jp/article/mit/27/5/27_332/_pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e9/60/e960568625201832f80344e55afcbee45fff566c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11409/mit.27.332"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>