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Scientific data searching, sharing and retrieval [article]

Ranjeet Devarakonda, Giri Palanisamy
2011 arXiv   pre-print
Mercury is a web-based metadata harvesting, data discovery and access system, built for researchers to search for, share and obtain biogeochemical data.  ...  Mercury renders various capabilities including metadata management, indexing, searching, data sharing, and also software reusability.  ...  Mercury Search System, Scientific data search, Data sharing, Metadata, Ecological Informatics, Climate change, Environmental informatics, Spatiotemporal data A key conclusion in a recent United States  ... 
arXiv:1101.1252v2 fatcat:46tuzn5se5czfn6usm4feyogve

A Fresh Look at FAIR for Research Software [article]

Daniel S. Katz, Morane Gruenpeter, Tom Honeyman, Lorraine Hwang, Mark D. Wilkinson, Vanessa Sochat, Hartwig Anzt, Carole Goble, for FAIR4RS Subgroup 1
2021 arXiv   pre-print
and data.  ...  management and stewardship for research software.  ...  ., git and mercurial).  ... 
arXiv:2101.10883v4 fatcat:cfrgm4ptvva3hgoqpti5sh3cyq

Optimizing your research data management [article]

Eliane Blumer, Sitthida Samath, Francesco Varrato, Alain Borel
2020 Zenodo  
This lesson is a 1-day training dedicated to research data management (RDM). The targeted audience is researchers who are interested in the topic, with no previous knowledge required.  ...  Readme: README.txt It explains the context of the lesson and its content. 2.  ...  with an object for purposes of discovery, description, use, management, and preservation.  ... 
doi:10.5281/zenodo.3773656 fatcat:pdcdtcs2jncklnk6rgy3lpyary

Framework for Building Collaborative Research Environment

Ranjeet Devarakonda, Giriprakash Palanisamy, Inigo San Gil
2014 International Journal of Recent Contributions from Engineering, Science & IT  
Drupal's content management system automatically stores the data in a structured format enabling it to be machine.  ...  Carefully structured data, as in machine readable data is the key to enabling these interactions.  ...  Mercury uses WENDI's continually growing metadata holdings to enable users' discovery of and access to wind energy-related databases, publications, applications and web sites ( Figure 5) .  ... 
doi:10.3991/ijes.v2i4.4017 fatcat:363dqtjoy5c4dmy33gh6hq2kqy

D7.4 How to be FAIR with your data. A teaching and training handbook for higher education institutions [article]

Claudia Engelhardt, Katarzyna Biernacka, Aoife Coffey, Ronald Cornet, Alina Danciu, Yuri Demchenko, Christopher Erdmann, Federica Garbuglia, Kerstin Germer, Kerstin Helbig, Margareta Hellström, Kristina Hettne (+27 others)
2021 Zenodo  
The document provides practical material, such as competence profiles, learning outcomes and lesson plans, and supporting information.  ...  It was written and edited by a group of about 40 collaborators in a series of six book sprint events that took place between 1 and 10 June 2021.  ...  ), Research Organization Registry (ROR) FAIR (Findable, Accessible, Interoperable, Reusable) principles in data 1, (16) management FAIR metadata management and tools for FAIR metadata  ... 
doi:10.5281/zenodo.5787046 fatcat:ibvm7yo4njfpfihebcgmgoz74y

CAPABLE D3.1: Information Architecture

Ronald Cornet, Francesca Polce, Rowdy de Groot
2021 Zenodo  
To maximally support the Interoperability Principle, data management and metadata management are based as much as possible on standard data models and terminologies.  ...  can be made accessible for verification and re-use.  ...  Adherence to the FAIR principles allows to make CAPABLE data accessible and reusable by third parties outside the project.  ... 
doi:10.5281/zenodo.5159072 fatcat:xaf27hdzhrbevmj3cez5dr33we

Ten simple rules to cultivate transdisciplinary collaboration in data science

Faryad Sahneh, Meghan A. Balk, Marina Kisley, Chi-kwan Chan, Mercury Fox, Brian Nord, Eric Lyons, Tyson Swetnam, Daniela Huppenkothen, Will Sutherland, Ramona L. Walls, Daven P. Quinn (+22 others)
2021 PLoS Computational Biology  
A shared set of standards and tools allows all project members to work together to organize data, collect metadata, improve data quality, and access data as needed.  ...  , and Reusable [27] ).  ... 
doi:10.1371/journal.pcbi.1008879 pmid:33983959 fatcat:vadmdi3sdzavza7kqddpe4rrvm

Approach towards a Holistic Management of Research Data in Planetary Science—Use Case Study Based on Remote Sensing Data

Andrea Nass, Martin Mühlbauer, Torsten Heinen, Mathias Böck, Robert Munteanu, Mario D'Amore, Torsten Riedlinger, Thomas Roatsch, Günter Strunz, Jörn Helbert
2022 Remote Sensing  
providing data storage and management capabilities, as well as an interface compliant with collaborative and web-based data access services, and the Environmental and Crisis Information Systems (UKIS)  ...  In order to efficiently manage and facilitate the reuse of research data and to provide stable and long-term access, sustainable research data solutions are needed.  ...  2021)) and Mercury (BepiColombo (, accessed on 2 December 2021)) and to the moons of the Outer Solar System (JUICE (https: //, accessed on 2 December  ... 
doi:10.3390/rs14071598 fatcat:akfhkgvzh5fntiyjywagwv7ajy

Flexible Middleware Support for Future Mobile Services and Their Context-Aware Adaptation [chapter]

Marcin Solarski, Linda Strick, Kiminori Motonaga, Chie Noda, Wolfgang Kellerer
2004 Lecture Notes in Computer Science  
Service adaptation takes into account both user preferences and contextual changes to modify the service behavior and contents.  ...  The middleware implementation is based on JXTA extended by a mobile agent platform and is deployable on a range of mobile devices including mobile phones and PDAs.  ...  We believe that the Mercury middleware system is an essential contribution to next generation mobile service provisioning, since it addresses the needs for advanced personalization and the identified requirements  ... 
doi:10.1007/978-3-540-30179-0_26 fatcat:ey24udiyurdmjf3kf2yu5oo2wi

M2.15 Assessment report on 'FAIRness of software'

Morane Gruenpeter, Roberto Di Cosmo, Hylke Koers, Patricia Herterich, Rob Hooft, Jessica Parland-von Essen, Jonas Tana, Tero Aalto, Sarah Jones
2020 Zenodo  
With this analysis we demonstrate to what extent each of the FAIR principles is seen as relevant, achievable and measurable; and in what sense it benefits software artifacts.  ...  Software has an important place in academia and as such it has an important place in the FAIR ecosystem.  ...  It discusses issues of identification, management, sharing, discovery, archiving and provenance of software source code, reviewing and revising metadata for describing and discovering source code, developing  ... 
doi:10.5281/zenodo.5472911 fatcat:wscidegolfbdvmpiowhh6ipn7y

Aggregated and Validated Datasets for the European Seas: The Contribution of EMODnet Chemistry

Alessandra Giorgetti, Marina Lipizer, Maria Eugenia Molina Jack, Neil Holdsworth, Hans Mose Jensen, Luminita Buga, George Sarbu, Athanasia Iona, Julie Gatti, Martin Larsen, Lotta Fyrberg, Ann Kristin Østrem (+1 others)
2020 Frontiers in Marine Science  
data management initiatives to properly collect and archive this kind of relevant metadata.  ...  need to be described and archived, together with the data, to allow data reusability and solid scientific analysis.  ...  This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY).  ... 
doi:10.3389/fmars.2020.583657 fatcat:yvjvmowmjfaelcckncik5z6pgm

The Special Case of Scientific Data Sharing with Education

Jillian C. Wallis, Stasa Milojevic, Christine L. Borgman, William A. Sandoval
2007 Proceedings of the American Society for Information Science and Technology  
The seemingly simple task of reusing data for science education relies on the presence of scientific data, scientists willing to share, infrastructure to provide access, and mechanisms to share between  ...  What makes sharing between scientists and science students a special case of data sharing, is that all of the implicit knowledge attending the data must pass along this same vector.  ...  The emerging SensorML is a modeling language for describing resources for sensor management and discovery but it does not describe sensor-derived data itself.  ... 
doi:10.1002/meet.14504301169 fatcat:t7gjmx3r25g55ibhjn63vhdz6y

DataPLANT - NFDI Consortium for Fundamental Plant Research

Dirk Von Suchodoletz, Björn Usadel, Jens Krüger, Timo Mühlhaus
2021 Zenodo  
In modern hypothesis-driven research, scientists increasingly rely on research data management (RDM) services and infrastructures to facilitate the collection, processing, exchange, and archiving of research  ...  The FAIR Data and Linked Open Data Principles provide critical guidelines for RDM.  ...  . sample characteristics, technology and measurement types, sample-to-data relationships) that make the resulting data and discoveries reproducible and reusable 45 .  ... 
doi:10.5281/zenodo.4836394 fatcat:ru7a4tmlxbcetibyryofsdx52i

Vision of Cyberinfrastructure for End-to-End Environmental Explorations (C4E4)

R. S. Govindaraju, B. Engel, D. Ebert, B. Fossum, M. Huber, C. Jafvert, S. Kumar, V. Merwade, D. Niyogi, L. Oliver, S. Prabhakar, G. Rochon (+2 others)
2009 Journal of hydrologic engineering  
The overall goal behind C4E4 is to enable a broad environmental research and remediation community to address the challenges of environmental data management and integration in real-world settings.  ...  Holistic approaches are needed for understanding and addressing a wide range of environmental issues that require multidisciplinary studies of complex and interlocking systems.  ...  On top of it are the multidisciplinary data management system and other middleware systems that manage and provide access to the resources.  ... 
doi:10.1061/(asce)1084-0699(2009)14:1(53) fatcat:nffdzc72ejexfksd2lajc33ygm

Enabling the data FAIRness of version control systems

Cas Fahrenfort, Zhiming Zhao, Thijs Gillebaart
2019 Zenodo  
discovery by introducing common standards for human and machine interaction with data, utilizing Persistent Identifiers (PIDs) and metadata.  ...  often managed by Version Control Systems (VCSs) such as Git and Subversion.  ...  knowledge discovery by assisting humans and machines in their discovery of, access to, integration and analysis of, task-appropriate scientific data and their associated algorithms and workflows [7]  ... 
doi:10.5281/zenodo.3583009 fatcat:wm4j3oom35bujgh4wkqmuhnq4a
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