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A review of heart chamber segmentation for structural and functional analysis using cardiac magnetic resonance imaging

Peng Peng, Karim Lekadir, Ali Gooya, Ling Shao, Steffen E. Petersen, Alejandro F. Frangi
2016 Magnetic Resonance Materials in Physics, Biology and Medicine  
Acknowledgments This work is has received funding from FP7-  ...  [163] construct a probabilistic atlas for atrium using 20 manually segmented training images.  ...  The atlas provides a spatially and temporally varying probabilistic map for the LV, RV, myocardium, and background including the liver, stomach, lungs, and skin.  ... 
doi:10.1007/s10334-015-0521-4 pmid:26811173 pmcid:PMC4830888 fatcat:cceypmtjrfbyjjtpkktjk7m7fi

Front Matter: Volume 7962

Proceedings of SPIE, Benoit M. Dawant, David R. Haynor
2011 Medical Imaging 2011: Image Processing  
Publication of record for individual papers is online in the SPIE Digital Library.  ...  Downloaded From: https://www.spiedigitallibrary.org/conference-proceedings-of-spie on 7/23/2018 Terms of Use: https://www.spiedigitallibrary.org/terms-of-use  ...  Utrecht (Netherlands) POSTER SESSION: ATLASES 7962 24 Evaluation of multi atlas-based approaches for the segmentation of the thyroid gland in IMRT head-and-neck CT images [7962-75] A.  ... 
doi:10.1117/12.895486 fatcat:k5eaur5cq5aevpg2i2dgqrcsbu

Small Animal Imaging with Magnetic Resonance Microscopy

B. Driehuys, J. Nouls, A. Badea, E. Bucholz, K. Ghaghada, A. Petiet, L. W. Hedlund
2008 ILAR journal  
Small animal magnetic resonance microscopy (MRM) has evolved significantly from testing the boundaries of imaging physics to its expanding use today as a tool in noninvasive biomedical investigations.  ...  We include a brief review of MR concepts and methods of animal handling and support, before covering a range of MRM applications-including the heart, lung, and brain-and the emerging field of MR histology  ...  This work was performed at the Duke Center for In Vivo Microscopy, an NCRR/NCI National Biomedical Technology Resource Center (P41 RR005959/U24 CA092656), with additional support from NIH/NHLBI (R01 HL055348  ... 
doi:10.1093/ilar.49.1.35 pmid:18172332 pmcid:PMC2770253 fatcat:wk7ojmdznnbhhf6svqb547cmri

Graphics, Vision, and Visualization in Medical Imaging: A State of the Art Report [article]

Norberto Ezquerra, Isabel Navazo, Tahia Infantes Morris, Eva Monclus
1999 Eurographics State of the Art Reports  
As the title of this paper suggests, one interesting result of this evolutionary process has been the fusion of traditionally disjointed yet highly interrelated areas: from computer vision and image processing  ...  As a result of these innovations, medical imaging has continued to re-invent itself, fundamentally changing the ways in which we see, communicate about, learn from, and interact with, medical information  ...  with numerous MR data sets [Vem98] .  ... 
doi:10.2312/egst.19991067 fatcat:xb3sv64whrh4vj22a6caleffby

Kidney segmentation in renal magnetic resonance imaging – current status and prospects

Frank G. Zollner, Marek Kocinski, Laura Hansen, Alena-Kathrin Golla, Amira Serifovic Trbalic, Arvid Lundervold, Andrzej Materka, Peter Rogelj
2021 IEEE Access  
The work of Barstugan et al. aims at segmenting adrenal tumors from MR image [86] .  ...  For unsupervised learning method, the fuzzy k-means (FKM) and k-harmonic means (KHM) were chosen.  ...  In particular her work is focused on medical image segmentation, convolutional neural networks and learning from limited data.  ... 
doi:10.1109/access.2021.3078430 fatcat:lmzeqqaf4jcahgzk2p5t45qroi

Non-rigid image registration: theory and practice

W R Crum, T Hartkens, D L G Hill
2004 British Journal of Radiology  
Image registration is an important enabling technology in medical image analysis.  ...  In this paper we discuss the current state of the art of non-rigid registration to put on-going research in context and to highlight current and future clinical applications that might benefit from this  ...  Acknowledgments The authors are grateful for the intellectual and financial support of the Medical Images and Signals IRC (EPSRC and MRC GR/N14248/01) and the UK e-science project IXI.  ... 
doi:10.1259/bjr/25329214 pmid:15677356 fatcat:fgcrow4uzjf27arer4yb2ifyve

ÉCole De Physique Des Houches [chapter]

2007 Les Houches  
activity in ideal surroundings for skiing, hiking or mountaineering.  ...  Established in 1951, the Physics School is located in a group of chalets surrounded by meadows and woods, at an altitude of 1150 m facing the Mont-Blanc range -a very favourable environment for intellectual  ...  Richard Hill for providing the ME180 tumor bearing mice and Mr. Michael Dunne for providing the H520 tumor bearing mice. Acknowledgement/References: 1. Schmittbuhl, M., Allenbach, B., Le Minor, J.  ... 
doi:10.1016/s0924-8099(13)60020-7 fatcat:jydcwidbbnf3nppqp4x3pyu6ga

École de Physique des Houches [chapter]

2008 Les Houches  
activity in ideal surroundings for skiing, hiking or mountaineering.  ...  Established in 1951, the Physics School is located in a group of chalets surrounded by meadows and woods, at an altitude of 1150 m facing the Mont-Blanc range -a very favourable environment for intellectual  ...  Richard Hill for providing the ME180 tumor bearing mice and Mr. Michael Dunne for providing the H520 tumor bearing mice. Acknowledgement/References: 1. Schmittbuhl, M., Allenbach, B., Le Minor, J.  ... 
doi:10.1016/s0924-8099(13)60004-9 fatcat:nxiezedqabbbtnfqonvw6c3doi

École de Physique des Houches [chapter]

2006 Les Houches  
activity in ideal surroundings for skiing, hiking or mountaineering.  ...  Established in 1951, the Physics School is located in a group of chalets surrounded by meadows and woods, at an altitude of 1150 m facing the Mont-Blanc range -a very favourable environment for intellectual  ...  Richard Hill for providing the ME180 tumor bearing mice and Mr. Michael Dunne for providing the H520 tumor bearing mice. Acknowledgement/References: 1. Schmittbuhl, M., Allenbach, B., Le Minor, J.  ... 
doi:10.1016/s0924-8099(06)80084-3 fatcat:6w7diik2k5af7cpowh4xz3nsky

Advances in Multimodal Data Fusion in Neuroimaging: Overview, Challenges, and Novel Orientation

Yu-Dong Zhang, Zhengchao Dong, Shui-Hua Wang, Xiang Yu, Xujing Yao, Qinghua Zhou, Hua Hu, Min Li, Carmen Jiménez-Mesa, Javier Ramirez, Francisco J. Martinez, Juan Manuel Gorriz
2020 Information Fusion  
of available imaging modalities, (4) fundamental fusion rules, (5) fusion quality assessment methods, and (6) the applications of fusion for atlas-based segmentation and quantification.  ...  Multimodal fusion in neuroimaging combines data from multiple imaging modalities to overcome the fundamental limitations of individual modalities.  ...  Let I ( x ) be a 3D image to be segmented into L different classes belonging to the atlas label set Λ = [ 1 , 2 , ..., ] .  ... 
doi:10.1016/j.inffus.2020.07.006 pmid:32834795 pmcid:PMC7366126 fatcat:3cmhcplb5bf2fgpx3kukifbj74

A combined local and global motion estimation and compensation method for cardiac CT

Qiulin Tang, Beshan Chiang, Akinola Akinyemi, Alexander Zamyatin, Bibo Shi, Satoru Nakanishi, Bruce R. Whiting, Christoph Hoeschen
2014 Medical Imaging 2014: Physics of Medical Imaging  
In this paper, we propose a fully automatic framework for MR-CT registration by synthesizing a pseudo CT image from MRI using a coregistered pair of MR and CT images as an atlas.  ...  (United States) Multi-atlas registration-based segmentation is a popular technique in the medical imaging community, used to transform anatomical and functional information from a set of atlases onto a  ...  Studies have shown that there is variation in the agreement between operators viewing the same tissue [1] suggesting that a complimentary technique for verification could improve the robustness of the  ... 
doi:10.1117/12.2043492 fatcat:fyzpc5m6jbh7fjohqpdmtzkhte

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner (+56 others)
2015 IEEE Transactions on Medical Imaging  
The transform is used to register the probabilistic tissue atlases to the MR sequences.  ...  The feature set includes: 1) MR sequences intensities and the difference between each two sequences; 2) neighborhood information with the mean, sum, median and intensity range of 3D cubic neighborhoods  ... 
doi:10.1109/tmi.2014.2377694 pmid:25494501 pmcid:PMC4833122 fatcat:csrnfqc4i5eilh7wk5howvpr4u

Computer-aided Detection of Prostate Cancer with MRI

Lizhi Liu, Zhiqiang Tian, Zhenfeng Zhang, Baowei Fei
2016 Academic Radiology  
Mp-MRI consists of T2-weighted sequences combined with functional sequences including dynamic contrast-enhanced MRI, diffusion-weighted MRI, and MR spectroscopy imaging.  ...  The prostate is subdivided into the base, mid-gland, and apex from superior to inferior.  ...  Their method is based on non-rigid registration of a set of pre-labeled atlas images. The label images of the deformed atlas are fused to yield a segmentation of images from a new patient.  ... 
doi:10.1016/j.acra.2016.03.010 pmid:27133005 pmcid:PMC5355004 fatcat:4w5dy3aqsvhthnz7kp57dtxywi

MRI-guidance for motion management in external beam radiotherapy: current status and future challenges

C Paganelli, B Whelan, M Peroni, P Summers, M Fast, T van de Lindt, J McClelland, B Eiben, P Keall, T Lomax, M Riboldi, G Baroni
2018 Physics in Medicine and Biology  
MF and TvdL would like to acknowledge that The Netherlands Cancer Institute is part of the Elekta Atlantic MR-Linac research consortium.  ...  JMC and BE are funded by the Stand Up to Cancer campaign for Cancer Research UK (C33589/CRC521) and Network Accelerator Award Grant (A219932).  ...  An alternative approach is fast 2D image acquisition by means of cine-MRI, which has been described in a number of studies for respiratory motion quantification, including lung, liver, pancreas and breast  ... 
doi:10.1088/1361-6560/aaebcf pmid:30457121 fatcat:gsnt45netjcajbsaragcjai2ei

CARS 2016—Computer Assisted Radiology and Surgery Proceedings of the 30th International Congress and Exhibition Heidelberg, Germany, June 21–25, 2016

2016 International Journal of Computer Assisted Radiology and Surgery  
We would like to thank the Spanish company BQ for the donation of the 3D printing hardware for clinical use.  ...  Acknowledgements This study was supported in part by grants from the Ohio Department of Development (TVSF 15-  ...  For 3D model-based approaches, however, building the 3D shape model from a training data set of segmented instances of an object is a major challenge and currently remains an open problem.  ... 
doi:10.1007/s11548-016-1412-5 pmid:27206418 fatcat:uk5r46n2xvhedkfjzmeiweyneq
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