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MausDB: An open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects

Holger Maier, Christoph Lengger, Bruno Simic, Helmut Fuchs, Valérie Gailus-Durner, Martin Hrabé de Angelis
2008 BMC Bioinformatics  
Conclusion: MausDB is suited for large-scale, high-throughput phenotyping facilities but can also be used exclusively for mouse colony management within smaller units or projects.  ...  We offer MausDB to the scientific community as open source software to provide a system for storage of data from functional genomics projects in a well-structured, easily accessible form.  ...  Thanks to Walter Pargent for helpful discussions about data management and for sharing the experiences he had with MouseNet.  ... 
doi:10.1186/1471-2105-9-169 pmid:18366799 pmcid:PMC2292142 fatcat:unw7wrw6izahlppck4fby22sea

Principles and application of LIMS in mouse clinics

Holger Maier, Christine Schütt, Ralph Steinkamp, Anja Hurt, Elida Schneltzer, Philipp Gormanns, Christoph Lengger, Mark Griffiths, David Melvin, Neha Agrawal, Rafael Alcantara, Arthur Evans (+18 others)
2015 Mammalian Genome  
Large-scale systemic mouse phenotyping, as performed by mouse clinics for more than a decade, requires thousands of mice from a multitude of different mutant lines to be bred, individually tracked and  ...  In terms of logistics, data capture, data analysis, result visualisation and reporting, new challenges have emerged from such projects. These challenges could hardly be  ...  , and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.  ... 
doi:10.1007/s00335-015-9586-7 pmid:26208973 pmcid:PMC4602070 fatcat:xyl7kpsq3zeltmhjy4rvalrxwi

RodentSQL: A software suite for colony management of animal protocols

Pawar Shrikant, Batra Harshul
2018 Journal of Engineering and Computer Innovations  
RodentSQL can be used exclusively for mouse colony management for smaller projects or large-scale facilities.  ...  It keeps records of phenotype and genotype data for comprehensive data analysis and mining. It is a user-friendly secure system for managing your mouse colony resources.  ...  Spreadsheets, in particular, are not well-suited for managing the complex data structures (such as breeding schemes) required for effective scientific data and colony management.  ... 
doi:10.5897/jeci2018.0191 fatcat:utzqsnhrjvgmjjm37yldhjdvem

RodentSQL: a software suite for colony management of animal protocols

Shrikant Pawar, Harshul Batra
2018 Future Science OA  
Animal experiments tend to generate large-scale data. Some existing tools like Microsoft Excel and colony management cloud-based tools are either cumbersome or expensive.  ...  We have successfully tested its usage in beta users for managing data of hamsters and mice. A central facility can share and benefit from this colony management system.  ...  No writing assistance was utilized in the production of this manuscript. Open access This work is licensed under the Creative Commons Attribution 4.0 License.  ... 
doi:10.4155/fsoa-2018-0054 pmid:30271620 pmcid:PMC6153456 fatcat:kyowmkfn2rgzritvvsypiibxii

TopoDB: a novel multifunctional management system for laboratory animal colonies

Adam Renschen, Atsuko Matsunaga, Jorge R Oksenberg, Adam Santaniello, Alessandro Didonna
2020 Database: The Journal of Biological Databases and Curation  
TopoDB allows an easy tracking of individual animals within the colony and breeding protocols as well as the convenient storage of both genetic and phenotypic data generated in the different experiments  ...  colony for research purposes and to safeguard the integrity of results.  ...  Acknowledgements The authors would like to thank the UCSF vivarium personnel for their help with colony maintenance and their feedback on this manuscript. Funding The  ... 
doi:10.1093/database/baaa098 pmid:33206961 pmcid:PMC7673335 fatcat:ghpg24reqnayxlt6mmh3pyldwm

Contents list

2018 Soft Matter  
Genetic determinism of cranial morphology is complex and largely unknown in humans. Animal models such as mice may be useful in identifying genes influencing skull morphogenesis.  ...  In particular, inbred strains of several mouse species show substantial morphological differences.  ...  P8 EXPLORING THE MOLECULAR BASIS FOR ATHLETIC PERFORMANCE TRAITS IN NORTH SWEDISH TROTTERS P9 MAUSDB: THE GERMAN MOUSE CLINIC OPEN SOURCE PHENOTYPE-AND MOUSE MANAGEMENT SYSTEM Phenotyping data upload  ... 
doi:10.1039/c8sm90107d fatcat:tko5byj5izccvgfzmdsssx4mgm