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Reactome enhanced pathway visualization
2017
Bioinformatics
Preserved Fulltext
Motivation: Reactome is a free, open-source, open-data, curated and peer-reviewed knowledge base of biomolecular pathways. Pathways are arranged in a hierarchical structure that largely corresponds to the GO biological process hierarchy, allowing the user to navigate from high level concepts like immune system to detailed pathway diagrams showing biomolecular events like membrane transport or phosphorylation. Here, we present new developments in the Reactome visualization system that facilitate
doi:10.1093/bioinformatics/btx441
pmid:29077811
pmcid:PMC5860170
fatcat:ypdq4ibaandhnbs6ysoegcgab4
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... navigation through the pathway hierarchy and enable efficient reuse of Reactome visualizations for users' own research presentations and publications. Results: For the higher levels of the hierarchy, Reactome now provides scalable, interactive textbook-style diagrams in SVG format, which are also freely downloadable and editable. Repeated diagram elements like 'mitochondrion' or 'receptor' are available as a library of graphic elements. Detailed lower-level diagrams are now downloadable in editable PPTX format as sets of interconnected objects. Availability and implementation: http://reactome.
The Reactome pathway Knowledgebase
2015
Nucleic Acids Research
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The Reactome Knowledgebase (www.reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other cellular processes as an ordered network of molecular transformations--an extended version of a classic metabolic map, in a single consistent data model. Reactome functions both as an archive of biological processes and as a tool for discovering unexpected functional relationships in data such as gene expression pattern surveys or somatic mutation
doi:10.1093/nar/gkv1351
pmid:26656494
pmcid:PMC4702931
fatcat:ikxhcsslzrfeziyzq2p6qadvay
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... logues from tumour cells. Over the last two years we redeveloped major components of the Reactome web interface to improve usability, responsiveness and data visualization. A new pathway diagram viewer provides a faster, clearer interface and smooth zooming from the entire reaction network to the details of individual reactions. Tool performance for analysis of user datasets has been substantially improved, now generating detailed results for genome-wide expression datasets within seconds. The analysis module can now be accessed through a RESTFul interface, facilitating its inclusion in third party applications. A new overview module allows the visualization of analysis results on a genome-wide Reactome pathway hierarchy using a single screen page. The search interface now provides auto-completion as well as a faceted search to narrow result lists efficiently.
Colony stimulating factor-1 receptor is a central component of the foreign body response to biomaterial implants in rodents and non-human primates
2017
Nature Materials
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Page 128 of POWER Vol. 83, Issue 1
[page]
1939
POWER
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Marissa, Ill. GEORGE BLUM ...
E R WEBBER
Simplex, Duplex, Complex? ...
Brown-Sequard syndrome from herniation of a thoracic disc
2014
CMAJ - Canadian Medical Association Journal
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Acknowledgement: The authors thank Marissa Webber for providing the illustration in Figure 1D . ...
doi:10.1503/cmaj.140117
pmid:25157052
pmcid:PMC4259774
fatcat:c5dsvnah6fgchgmok3czrx2ftm
Acknowledgments
[chapter]
2020
Art for People's Sake
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Siddha Webber); and to Chicago' s students and teachers, their curiosity and imagination, and their struggles for equity and justice. ...
In connection with research and programs there that nourished this book, I wish to thank Marissa Baker, Natalie Battles, Sammie Dortch, Skyla Hearn, Faheem Majeed, Charles Miles, Maséqua Myers, Clinton ...
doi:10.1515/9781478002468-002
fatcat:zznssjkn6fhwbpuhjev7au4la4
Page 5025 of Psychological Abstracts Vol. 88, Issue 12
[page]
2001
Psychological Abstracts
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., 37569 Adamson, Lynne, 38156 Adams-Webber, J. ...
Javier, 37105
Amato, Paul R., 36521
Ambo, Hideo, 36892
Amdur, Marissa, 35548
Ameli, Rezvan, 36159
Amend, D., 36024
Ameratunga, Shanthi, 38727
American Psychological Asso, 38169
Amiaz, Revital, 37810
Amir ...
Issue Information ‐ TOC
2022
Nations and Nationalism
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(Marx 1970 (Marx [1844]] : 333); • in the case of online references that do not include a publication date, the reference should be as follows: (Webber online) • op.cit., ibid., idem. etc. should not be ...
From cyberfascism to terrorism: challenges of American Jewish return migrants in the Israel On 4chan/pol/ culture and the transnational production of Defense Forces memetic violence HANS SIEBERS AND MARISSA ...
doi:10.1111/nana.12744
fatcat:nvnmhqnoingr5c76jlzi2nwcoa
A survey of Canadian cancer patients' perspectives on the characteristics and treatment of breakthrough pain
2013
Supportive Care in Cancer
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In a study by Webber et al., it was found that patients often had difficulty in describing their pain to their physician, as they were unable to find the right words to accurately describe it. ...
doi:10.1007/s00520-013-1817-4
pmid:23636647
fatcat:5idj5qi7zbhxve6zhkxgnyy37m
Supplemental Material for Proceedings of the American Psychological Association for the Legislative Year 2013: Minutes of the Annual Meeting of the Council of Representatives, February 22–24, 2013, Washington, DC, and July 31 and August 2, 2013, Honolulu, Hawaii, and Minutes of the February, June, April, July/August, and December 2013 Meetings of the Board of Directors
2014
American Psychologist
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Webber, Brittany Lauren
Weber, Iris
Weber, Paola B.
Weber, Stephanie Marie
Webster, Rebecca Dian
Weeks, Molly Stroud
Wegner, Kristin M. ...
Floro, Marissa C. Floyd, Ligia Ivonne Follman, Leslie Fonck, Rene Forest, Mary Formisano, Felicia D. Fox, Rachel Anne Franklin, Bridgette Taflinski, Leida Taggart, Jeff Takkash, Ali M. ...
doi:10.1037/a0036645.supp
fatcat:y3of2yg6qvfv5fbsnzrmeudkxq
Obesity in Youth with Type 1 Diabetes in Germany, Austria, and the United States
2015
Journal of Pediatrics
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Objective To examine the current extent of the obesity problem in 2 large pediatric clinical registries in the US and Europe and to examine the hypotheses that increased body mass index (BMI) z-scores (BMIz) are associated with greater hemoglobin A1c (HbA1c) and increased frequency of severe hypoglycemia in youth with type 1 diabetes (T1D). Study design International (World Health Organization) and national (Centers for Disease Control and Prevention/ German Health Interview and Examination
doi:10.1016/j.jpeds.2015.05.046
pmid:26164381
fatcat:taz7bav7wffjrj7fmcque43ta4
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... ey for Children and Adolescents) BMI references were used to calculate BMIz in participants (age 2-<18 years and $1 year duration of T1D) enrolled in the T1D Exchange (n = 11 435) and the Diabetes Prospective Follow-up (n = 21 501). Associations between BMIz and HbA1c and severe hypoglycemia were assessed. Results Participants in both registries had median BMI values that were greater than international and their respective national reference values. BMIz was significantly greater in the T1D Exchange vs the Diabetes Prospective Follow-up (P < .001). After stratification by age-group, no differences in BMI between registries existed for children 2-5 years, but differences were confirmed for 6-to 9-, 10-to 13-, and 14-to 17-year age groups (all P < .001). Greater BMIz were significantly related to greater HbA1c levels and more frequent occurrence of severe hypoglycemia across the registries, although these associations may not be clinically relevant. Conclusions Excessive weight is a common problem in children with T1D in Germany and Austria and, especially, in the US. Our data suggest that obesity contributes to the challenges in achieving optimal glycemic control in children and adolescents with T1D. (J Pediatr 2015;-:---).
Subjective effects to marijuana associated with marijuana use in community and clinical subjects
2010
Drug and Alcohol Dependence
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The scales are formed by taking pairs of items with the highest correlation and including other items that fit into the scale until there is no further improvement (Webber and Huxley, 2007) . ...
doi:10.1016/j.drugalcdep.2009.12.026
pmid:20149559
pmcid:PMC3000695
fatcat:fz5i4oqlj5cobhdfgb4zf4asde
Subjective effects for alcohol, tobacco, and marijuana association with cross-drug outcomes
2012
Drug and Alcohol Dependence
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Scales from MSA are formed by taking pairs of items with the highest correlation and including other items until there is no further improvement (Webber and Huxley, 2007) . ...
doi:10.1016/j.drugalcdep.2012.02.014
pmid:22445481
pmcid:PMC3729264
fatcat:2dgp5x2b5bahhpiaoeau6ssnte
Supplemental Material for Proceedings of the American Psychological Association for the Legislative Year 2014 : Minutes of the Annual Meeting of the Council of Representatives, February 21–23, 2014, Washington, DC, and August 6 and August 8, 2014, Washington, DC, and Minutes of the February, June, August, and December 2014 Meetings of the Board of Directors
2015
American Psychologist
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Tsuda, Lily
Tuazon, Anna Cristina
Angeles
Tung, Wai Ming Phyllis
Tunis, Marissa S.
Turner, Charles Wayne
Turner, Darrel B. ...
Floro, Marissa C.
Foreman, Cia
French, Alexis N.
Fullick, Julia M.
Fullmer Yetter, Brooke
Furtaw, Paul C.
Macias, Salvador
Maciel, Duan Lee
Magana, Marichu G. ...
doi:10.1037/a0039369.supp
fatcat:uawfjspuybevrgatrvaitctbde
Maine Sea Grant Annual Report 2016 MAINE SEA GRANT Annual Report to the Vice President for Research
2017
unpublished
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Bigelow-Colby Semester Program
Program Development (Webber)
Tyler Lewtan
Colby College
Unknown
Program Development (Webber)
Albertha Ladina
Colby College
Unknown
Program Development (Webber) ...
)
Vanessa Van Deusen
Barnard College
Unknown
Program Development (Webber)
Mahellelah Shauer
Humboldt University
Bigelow REU Program
Program Development (Webber)
Emily Geske
Colby College ...
fatcat:4ovvzrw5bnbyvekv22mdf2gh3q
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