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Mapping the Connectome: Multi-Level Analysis of Brain Connectivity

Trygve B. Leergaard, Claus C. Hilgetag, Olaf Sporns
<span title="">2012</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/w7oms7cvvjfs7ht4yodsyhuzku" style="color: black;">Frontiers in Neuroinformatics</a> </i> &nbsp;
at reasonably comprehensive connectome maps has spurred a large number of projects in the analysis of complex brain connectivity (e.g., Modha and Singh, 2010) as well as the computational modeling of  ...  AdvAnces in multi-level connectivity mApping Sophisticated neuroimaging techniques have opened up new possibilities to infer structural and functional connectivity at a macroscopic scale.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fninf.2012.00014">doi:10.3389/fninf.2012.00014</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22557964">pmid:22557964</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3340894/">pmcid:PMC3340894</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/y6yhuz2wkffyboytd6g5f3a264">fatcat:y6yhuz2wkffyboytd6g5f3a264</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170830051923/https://fjfsdata01prod.blob.core.windows.net/articles/files/26823/pubmed-zip/.versions/1/.package-entries/fninf-06-00014/fninf-06-00014.pdf?sv=2015-12-11&amp;sr=b&amp;sig=dsAaQ3a5hZmuII1OAMUMbJkcvbrdYXjczk7Trc7uiYY%3D&amp;se=2017-08-30T05%3A19%3A33Z&amp;sp=r&amp;rscd=attachment%3B%20filename%2A%3DUTF-8%27%27fninf-06-00014.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6b/94/6b943b71be06bcc431b4699276edb87182542142.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fninf.2012.00014"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3340894" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Mapping the Human Connectome

Arthur W. Toga, Kristi A. Clark, Paul M. Thompson, David W. Shattuck, John Darrell Van Horn
<span title="">2012</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/d6l4p7cnojfyvg3o26z4x3gacy" style="color: black;">Neurosurgery</a> </i> &nbsp;
The authors also would like to thank their colleagues at the Martinos Center for Biomedical Imaging at Massachusetts General Hospital.  ...  A map of the Human Connectome The connectome may be defined as the complete, point-to-point spatial connectivity of neural pathways in the brain. 4 This detailed, multiscaled, and multivariate matrix  ...  The connectome gives rise to population-level atlases of distributed connectivity and makes it possible to assess disruptions of connectivity in clinical samples.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1227/neu.0b013e318258e9ff">doi:10.1227/neu.0b013e318258e9ff</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22705717">pmid:22705717</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3555558/">pmcid:PMC3555558</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fuewqgvlnrewrglqzxfiba7hsm">fatcat:fuewqgvlnrewrglqzxfiba7hsm</a> </span>
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Mapping hybrid functional-structural connectivity traits in the human connectome [article]

Enrico Amico, Joaquín Goñi
<span title="2018-02-21">2018</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We here propose an extension of the Connectivity Independent Component Analysis (connICA) framework, to identify joint structural-functional connectivity traits.  ...  Overall, these findings confirms the potential ofthe hybrid connICA for the compression of structural/functional connectomes into integrated patterns from a set of individual brain networks.  ...  We then mapped each resulting hybrid connectivity profile onto a brain cortical surface ( Fig.3) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1710.02199v3">arXiv:1710.02199v3</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pctl2jbilfeuppantgjh3shcwm">fatcat:pctl2jbilfeuppantgjh3shcwm</a> </span>
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Mapping the Alzheimer's Brain with Connectomics

Teng Xie, Yong He
<span title="">2012</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/7qi7czvcwfgankg6qiypfrijvm" style="color: black;">Frontiers in Psychiatry</a> </i> &nbsp;
patterns of the human brain (i.e., the human connectome) in health and disease.  ...  In this review we will summarize recent advances discovered in large-scale brain network studies of AD, mainly focusing on graph theoretical analysis of brain connectivity abnormalities.  ...  www.frontiersin.org Second, multi-modal analysis represents one potential avenue for future research on connectomics.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fpsyt.2011.00077">doi:10.3389/fpsyt.2011.00077</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22291664">pmid:22291664</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3251821/">pmcid:PMC3251821</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/awzfirvjunfvtomowr3vvge4k4">fatcat:awzfirvjunfvtomowr3vvge4k4</a> </span>
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The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI

Alessandro Daducci, Stephan Gerhard, Alessandra Griffa, Alia Lemkaddem, Leila Cammoun, Xavier Gigandet, Reto Meuli, Patric Hagmann, Jean-Philippe Thiran, Christopher P. Hess
<span title="2012-12-18">2012</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
brain connectivity analyses.  ...  Researchers working in the field of global connectivity analysis using diffusion magnetic resonance imaging (MRI) can count on a wide selection of software packages for processing their data, with methods  ...  Acknowledgments The authors would like to thank Christophe Chênes and Daniel Ginsburg for major code contributions. Special thanks also go to Cristina Granziera for all the fruitful discussions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0048121">doi:10.1371/journal.pone.0048121</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23272041">pmid:23272041</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3525592/">pmcid:PMC3525592</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/naavh6nttrcorackmqsttvxihe">fatcat:naavh6nttrcorackmqsttvxihe</a> </span>
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Mapping the functional connectome traits of levels of consciousness [article]

Enrico Amico, Daniele Marinazzo, Carol DiPerri, Lizette Heine, Jitka Annen, Charlotte Martial, Mario Dzemidzic, Steven Laureys, Joaquín Goñi
<span title="2016-11-02">2016</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The first one represents the functional configuration it is associated to a sedative (sevoflurane), the overall effect of the pathology and the level of arousal.  ...  Examining task-free functional connectivity (FC) in the human brain offers insights on how spontaneous integration and segregation of information relate to human cognition, and how this organization may  ...  This research was supported by the This research was supported by the Belgian  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1605.03031v2">arXiv:1605.03031v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nhuf3nn5kvfxnf4hp7sbmk2gne">fatcat:nhuf3nn5kvfxnf4hp7sbmk2gne</a> </span>
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Mapping the functional connectome traits of levels of consciousness

Enrico Amico, Daniele Marinazzo, Carol Di Perri, Lizette Heine, Jitka Annen, Charlotte Martial, Mario Dzemidzic, Murielle Kirsch, Vincent Bonhomme, Steven Laureys, Joaquín Goñi
<span title="">2017</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
Significance Statement In this study we propose a novel methodology for the analysis of functional brain connectomes, namely connICA, which consists of the extraction of robust independent patterns of  ...  The first one represents the functional configuration of an "awake resting" brain, and is associated to the level of arousal.  ...  mapping up to N(N-1)/2 functional connections and their subsequent multi-linear models (N being the number of brain regions), the multi-layered output of connICA allows to focus on a small subset of robust  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2017.01.020">doi:10.1016/j.neuroimage.2017.01.020</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28093358">pmid:28093358</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/up4wekqgrbftjekzx75x45uvky">fatcat:up4wekqgrbftjekzx75x45uvky</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180719152657/https://scholarworks.iupui.edu/bitstream/handle/1805/14375/Amico_2017_mapping.pdf;jsessionid=5037DB71D0FBD60D0C7CFA1D5AC1A8A6?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/32/50/325063f039e84f4a200277d4ec988a3658bb4fdf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2017.01.020"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Human connectomics

Timothy EJ Behrens, Olaf Sporns
<span title="">2012</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/k3yjoadbwjdifhgyc2nqlfzg2u" style="color: black;">Current Opinion in Neurobiology</a> </i> &nbsp;
Collectively, advances in human connectomics open up the possibility of studying how brain connections mediate regional brain function and thence behaviour.  ...  Recent advances in non-invasive neuroimaging have enabled the measurement of connections between distant regions in the living human brain, thus opening up a new field of research: Human connectomics.  ...  Introduction The principal goal of connectomics is the comprehensive mapping and analysis of brain connectivity, across all scales, from the micro-scale of individual synaptic connections between neurons  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.conb.2011.08.005">doi:10.1016/j.conb.2011.08.005</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21908183">pmid:21908183</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3294015/">pmcid:PMC3294015</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3ivb6cw6vrhrjksrp2faxrq5lm">fatcat:3ivb6cw6vrhrjksrp2faxrq5lm</a> </span>
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A case study in connectomics: the history, mapping, and connectivity of the claustrum

Carinna M. Torgerson, John D. Van Horn
<span title="2014-11-11">2014</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/w7oms7cvvjfs7ht4yodsyhuzku" style="color: black;">Frontiers in Neuroinformatics</a> </i> &nbsp;
the shift from micro-connectomics to macro-connectomics advances the field of neuroscience and improves our capacity to understand the brain.  ...  The claustrum seems to have been waiting for the science of connectomics.  ...  It is true that connectomic analysis is already enhancing our understanding of the brain.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fninf.2014.00083">doi:10.3389/fninf.2014.00083</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25426062">pmid:25426062</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4227511/">pmcid:PMC4227511</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rqz4wuabdna27nizj2uc627j2m">fatcat:rqz4wuabdna27nizj2uc627j2m</a> </span>
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The challenge of mapping the human connectome based on diffusion tractography

Klaus H. Maier-Hein, Peter F. Neher, Jean-Christophe Houde, Marc-Alexandre Côté, Eleftherios Garyfallidis, Jidan Zhong, Maxime Chamberland, Fang-Cheng Yeh, Ying-Chia Lin, Qing Ji, Wilburn E. Reddick, John O. Glass (+65 others)
<span title="2017-11-07">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a4wan6l5o5dfzn767kyz7jqevi" style="color: black;">Nature Communications</a> </i> &nbsp;
Tractography based on non-invasive diffusion imaging is central to the study of human brain connectivity. To date, the approach has not been systematically validated in ground truth studies.  ...  Here, we report the encouraging finding that most state-of-the-art algorithms produce tractograms containing 90% of the ground truth bundles (to at least some extent).  ...  underlying structural connectome of the human brain 1 .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41467-017-01285-x">doi:10.1038/s41467-017-01285-x</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29116093">pmid:29116093</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5677006/">pmcid:PMC5677006</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6s7zph3cdfd6xbb4aq3y6ur3my">fatcat:6s7zph3cdfd6xbb4aq3y6ur3my</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180719040918/http://orca.cf.ac.uk/109626/1/s41467-017-01285-x.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/81/45/81450c2a6fb4be02683fad6cbbf3dd245100f237.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41467-017-01285-x"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> nature.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5677006" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Beyond the connectome: A map of a brain architecture derived from whole-brain volumetric reconstructions [article]

Christopher A. Brittin, Steven J Cook, David H Hall, Scott W Emmons, Netta Cohen
<span title="2020-05-27">2020</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
level stereotyped connections between different regions of the brain.  ...  We find that the C. elegans connectome is not invariant, but that a precisely wired core circuit is embedded in a background of variable connectivity, and propose a corresponding reference connectome for  ...  ring. 134 A C. elegans brain map 135 We integrate the knowledge gained to map the architecture of the C. elegans brain: The macro-connectome bundle organization 136 (Figure 1(a) ) allows us to crudely  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.05.24.112870">doi:10.1101/2020.05.24.112870</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vjfqsr7svvcu3fo3mjbb5rda4m">fatcat:vjfqsr7svvcu3fo3mjbb5rda4m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200711221708/https://www.biorxiv.org/content/biorxiv/early/2020/05/27/2020.05.24.112870.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/91/60/91605587b092451973a62bbe4cc01706445da9bd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.05.24.112870"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Mapping the Rest of the Human Connectome: Atlasing the Spinal Cord and Peripheral Nervous System

Andrei Irimia, John Darrell Van Horn
<span title="2020-11-04">2020</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
The emergence of diffusion, structural, and functional neuroimaging methods has enabled major multi-site efforts to map the human connectome, which has heretofore been defined as containing all neural  ...  Here we recommend a modification to the definition of the human connectome to include the SC and PNS, and argue for the creation of an inclusive atlas to complement current efforts to map the brain's human  ...  imaging techniques for mapping nerve pathways outside the brain at a level of detail which can rival the state of the art in brain connectomics.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2020.117478">doi:10.1016/j.neuroimage.2020.117478</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33160086">pmid:33160086</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8485987/">pmcid:PMC8485987</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nje75t2s4bdrpkqpwtouxu73d4">fatcat:nje75t2s4bdrpkqpwtouxu73d4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210529101958/https://pdf.sciencedirectassets.com/272508/1-s2.0-S1053811920X00176/1-s2.0-S1053811920309630/main.pdf?X-Amz-Security-Token=IQoJb3JpZ2luX2VjEMr%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLWVhc3QtMSJIMEYCIQDSYviWyPP2SlPwfZ20670JY8kw1bwEGHc%2Fx8yzd4dj6AIhAP4%2BQYrxJuZ83mpGRo6AeNtrc19vySLK%2B%2FEWwVPRnxT4KvoDCHIQBBoMMDU5MDAzNTQ2ODY1IgzJhFJ8Fw97lbnJH9Mq1wMO8cjpEmbl4aaVc2FgLuOuqiUNm8%2BdqElvgDlFDnVgJ4jdBS2W8j81U9gt%2FvoAcfMnZcsd9DlOO2%2FHai02SyOXu7fnaPkdJu%2B%2Fa0xuhQ5cvuF543Hl6S3ePyHHIl3vZNXFdg%2FjdxlvGPbt9P39mBQmHtZ5iCNHbpssZwCoxm2XK0dQynoHYmwluPfTiDSpKGJ3Uffj%2FGogLYASqLeU2%2Fv7DWVDW%2Bt2Vum0nt2kec9DKjkNdHs9bS%2BCcjkOjM1P3b1khf6qqxrsQIhp9T%2Fkop0yE21MN%2BpVGuVuksQm6%2B5nZltyUvPYYT6BaItrs3qIjLa8CTP8id2Qu%2BVtxP6FPDipKbD9xCmBOe%2BMWKQB4Vi%2Bj4AkYY5EjFkWYVZ53%2F9ZUBUWrHRCzpx8WsaEoTgRyNv33ZRDeJjukUnE0%2BqGqQp03M7TfKQWAtqZm4HePt2vpwkp6AsUdXVDBoA2758x6N%2BbYMaUShVY3FrTCVTjN1vwYC0Z3yk9VY%2FlIdgZMEki5Ql8rWDz55%2FR%2FXIaMIPV5LqC776RukxnB5PGOI7Q8BlH6hy1Gc4%2Fp%2FRSks9vO4BPdUj1%2B9Feb2XTTTslr%2BOA3%2FInLLdvNDwcPiEgY7uU8aRfxSDqb0Lw6uIwiIrIhQY6pAH7JOwSh2gpfAeQSFyny52lOWdQkmpWnaQI%2F37hcztLWeIErBnyGHXugm0QswxbidVVdCRUgQniwATtwPmYNpYo57aLr2NLZJMfCj0IgMYIxNnYhbyew8z1CXkyBVpZjtKq8Dlx595roocKo1c7unRueaCFCLwNts5SvwIoc4hcalO54Ka4giHQEd21z9EJg9LNmrhlFWxMuA2ChH1Ez5o%2FCI4Scg%3D%3D&amp;X-Amz-Algorithm=AWS4-HMAC-SHA256&amp;X-Amz-Date=20210529T101951Z&amp;X-Amz-SignedHeaders=host&amp;X-Amz-Expires=300&amp;X-Amz-Credential=ASIAQ3PHCVTYTNE6UG6B%2F20210529%2Fus-east-1%2Fs3%2Faws4_request&amp;X-Amz-Signature=0a90cc84c12d1432f6200a9f6dc3defe0dfa26d7819eaa813513057f3e819e69&amp;hash=23d898c512073f0816262cb29494d45609f8b4cbe2e8b767a3cb19ffb258d81d&amp;host=68042c943591013ac2b2430a89b270f6af2c76d8dfd086a07176afe7c76c2c61&amp;pii=S1053811920309630&amp;tid=spdf-ff4d3262-d47e-44ae-898c-dd24483bd11a&amp;sid=d5edbea82e10a845c00be3422d8f9a7b67b3gxrqa&amp;type=client" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/05/ff05d0334dd50a44cdbecd304c040ba178879e6b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2020.117478"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8485987" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Visualization in Connectomics [article]

Hanspeter Pfister, Verena Kaynig, Charl P. Botha, Stefan Bruckner, Vincent J. Dercksen, Hans-Christian Hege, Jos B. T. M. Roerdink
<span title="2012-08-07">2012</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Connectomics is a field of neuroscience that analyzes neuronal connections. A connectome is a complete map of a neuronal system, comprising all neuronal connections between its structures.  ...  The term "connectome" is close to the word "genome" and implies completeness of all neuronal connections, in the same way as a genome is a complete listing of all nucleotide sequences.  ...  Fig. 3 On the left, different brain regions have been mapped to 2-D using multi-dimensional scaling, with some of the strongest fMRI-derived connections between them shown as lines [81] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1206.1428v2">arXiv:1206.1428v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xjayhfspffe7hloxan4drfkggy">fatcat:xjayhfspffe7hloxan4drfkggy</a> </span>
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Mapping the human connectome at multiple scales with diffusion spectrum MRI

Leila Cammoun, Xavier Gigandet, Djalel Meskaldji, Jean Philippe Thiran, Olaf Sporns, Kim Q. Do, Philippe Maeder, Reto Meuli, Patric Hagmann
<span title="">2012</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/huhco7lwxvct3fbbxk44mmpflu" style="color: black;">Journal of Neuroscience Methods</a> </i> &nbsp;
The global structural connectivity of the brain, the human connectome, is now accessible at millimeter scale with the use of MRI.  ...  In this paper, we describe an approach to map the connectome by constructing normalized whole-brain structural connection matrices derived from diffusion MRI tractography at 5 different scales.  ...  Acknowledgments This work is partially supported by the Center for Biomedical Imaging (CIBM) of the Geneva-Lausanne Universities, the EPFL, and the foundations Leenaards and Louis-Jeantet, by an interdisciplinary  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jneumeth.2011.09.031">doi:10.1016/j.jneumeth.2011.09.031</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22001222">pmid:22001222</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/squfasyetzahhg6e4rzcgxlnuq">fatcat:squfasyetzahhg6e4rzcgxlnuq</a> </span>
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Visualization in Connectomics [chapter]

Hanspeter Pfister, Verena Kaynig, Charl P. Botha, Stefan Bruckner, Vincent J. Dercksen, Hans-Christian Hege, Jos B. T. M. Roerdink
<span title="">2014</span> <i title="Springer London"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/k6cwcpfsu5gs7bvkoa5pdlbe6q" style="color: black;">Mathematics and Visualization</a> </i> &nbsp;
Connectomics is a branch of neuroscience that attempts to create a connectome, i.e., a complete map of the neuronal system and all connections between neuronal structures.  ...  We also discuss data integration and neural network modeling, as well as the visualization, analysis and comparison of brain networks.  ...  A connectome is a complete map of a neuronal system, comprising all neuronal connections between its structures.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4471-6497-5_21">doi:10.1007/978-1-4471-6497-5_21</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hlsaktgoofabnaa25zpykhlgpa">fatcat:hlsaktgoofabnaa25zpykhlgpa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180725091954/https://vis.uib.no/wp-content/papercite-data/pdfs/Pfister-2014-VIC.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/69/27/6927ff6af5baebe798762594fd188119c34112b1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4471-6497-5_21"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>
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